Locus 7653

Sequence ID 2L_DroMel_CAF1
Location 21,298,512 – 21,298,623
Length 111
Max. P 0.834520
window12296

overview

Window 6

Location 21,298,512 – 21,298,623
Length 111
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 81.98
Mean single sequence MFE -23.07
Consensus MFE -17.58
Energy contribution -17.83
Covariance contribution 0.25
Combinations/Pair 1.27
Mean z-score -2.05
Structure conservation index 0.76
SVM decision value 0.73
SVM RNA-class probability 0.834520
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21298512 111 + 22407834
CGAUUUCGGCAUUUAUAUUAACCUAAAGAUGGCUCUAUAGUUUGCGCGCAAGCAAAAACAAGCAGCACCUAGGUGCC-CAAACACA---AC----AAAAUGGAAACGUAUAAAAAUCAA
.(((((.((((((((((((........))))(((((...((((..((....))..)))).)).)))...))))))))-........---..----...(((....)))....))))).. ( -24.10)
>DroPse_CAF1 24284 114 + 1
AGUUCUCAGCAUUUAUAUUGACGUAAAAAUGGCUUUAUAGUUUGUGCGCAAGCAACAACAACAAGCACCUAGGUGCC-UCAACACAAGAAC----AACAUGGAAACGUAUAAAAAGCAA
.........(((((.(((....))).)))))(((((...((((.(((....)))..........((((....)))).-.........))))----...(((....)))....))))).. ( -23.80)
>DroWil_CAF1 38556 115 + 1
AGGUUUUUGCAUUUAUAUUAACGUGAAAAUGGAUUUAUAGUUUGUGCGCAAGCAACAAAACACCGCACUUAGGUGCC-CAAACACA---ACAAUUAAAAUGGAAUCGUAUACACUAAAA
.(((...(((...........(((....)))(((((...((((.(((....)))...))))...((((....)))).-........---............))))))))...))).... ( -22.40)
>DroYak_CAF1 20637 111 + 1
CGUUUUCAGCAAUUGUAUUAACGUAAAAAUGGCUCUAUAGUUUGCGCGCAAGCAAAAACAACCAGCACUUAAGUGCC-CAACCACA---AC----AAAAUGGAAACGUAUAAAAAUCAA
(((((((((((((((((....(((....)))....))))).))))((....))...........((((....)))).-........---..----....))))))))............ ( -23.30)
>DroAna_CAF1 18297 113 + 1
AGUUUUCGGCAUUUAUAUUGACGUAAAGAUGGCUCUAUAGUUUGCGUAUUAGCAACAACAACCAGCACCUAGGUGCCCCAAACACAC--AA----AAAAUGGAAACGUAUACAAAACUC
.((((..((((((((.....(((((((.(((....)))..)))))))....((...........))...))))))))..))))....--..----...(((....)))........... ( -21.00)
>DroPer_CAF1 25885 114 + 1
AGUUCUCAGCAUUUAUAUUGACGUAAAAAUGGCUUUAUAGUUUGUGCGCAAGCAACAACAACAAGCACCUAGGUGCC-UCAACACAAGAAC----AACAUGGAAACGUAUAAAAAGCAA
.........(((((.(((....))).)))))(((((...((((.(((....)))..........((((....)))).-.........))))----...(((....)))....))))).. ( -23.80)
>consensus
AGUUUUCAGCAUUUAUAUUAACGUAAAAAUGGCUCUAUAGUUUGCGCGCAAGCAACAACAACCAGCACCUAGGUGCC_CAAACACA___AC____AAAAUGGAAACGUAUAAAAAACAA
.(((((((.(((((.(((....))).)))))........(((((.((....))...........((((....))))..)))))................)))))))............. (-17.58 = -17.83 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:59 2006