Locus 7652

Sequence ID 2L_DroMel_CAF1
Location 21,283,448 – 21,283,548
Length 100
Max. P 0.850208
window12295

overview

Window 5

Location 21,283,448 – 21,283,548
Length 100
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -23.80
Consensus MFE -16.47
Energy contribution -19.70
Covariance contribution 3.23
Combinations/Pair 1.06
Mean z-score -1.93
Structure conservation index 0.69
SVM decision value 0.79
SVM RNA-class probability 0.850208
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21283448 100 + 22407834
UGUUCCAAAGUCUGUGACUGACUGGUUUGGGCGGUA------AGACAUAUGAAUUAA--------------AAAAAAAAACGAAAUAAAAUCUAAAAACAUUUGAAGUAUGUUUUUGGAU
.((((....((((...((((.((.....)).)))).------))))....))))...--------------..................((((((((((((.......)))))))))))) ( -19.80)
>DroSec_CAF1 9025 120 + 1
UUUUCAAAAGUCUGUGAGUUACUGGUUUUGGCGAGAACUUUUAGACAUAUGAAUACAAAUUUACAAGUCUAAGAAGAAAACUAAAUAAGAUCUAAAAACAUUUGAAGUAUGCUUUUGGAC
..((((...(((((.(((((.((.((....)).))))))).)))))...)))).....(((((....(((....)))....)))))....(((((((.(((.......))).))))))). ( -21.70)
>DroSim_CAF1 9034 120 + 1
UGUUCAAAAGUCUGUGAGUUACUGGUUUUGGCGAGAACUUUUAGACAUAUGAAUACAAAUUUACAAGUCUAAGAAGAAAACUAAAUAAGGUCUAAAAACAUUUGAAGUAUGUUUUUGGAC
((((((...(((((.(((((.((.((....)).))))))).)))))...))))))...(((((....(((....)))....)))))...((((((((((((.......)))))))))))) ( -29.90)
>consensus
UGUUCAAAAGUCUGUGAGUUACUGGUUUUGGCGAGAACUUUUAGACAUAUGAAUACAAAUUUACAAGUCUAAGAAGAAAACUAAAUAAGAUCUAAAAACAUUUGAAGUAUGUUUUUGGAC
.(((((...(((((.(((((.((.((....)).))))))).)))))...)))))...................................((((((((((((.......)))))))))))) (-16.47 = -19.70 +   3.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:58 2006