Locus 7651

Sequence ID 2L_DroMel_CAF1
Location 21,281,636 – 21,281,747
Length 111
Max. P 0.517625
window12294

overview

Window 4

Location 21,281,636 – 21,281,747
Length 111
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.04
Mean single sequence MFE -24.00
Consensus MFE -15.70
Energy contribution -14.95
Covariance contribution -0.75
Combinations/Pair 1.42
Mean z-score -1.49
Structure conservation index 0.65
SVM decision value -0.03
SVM RNA-class probability 0.517625
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21281636 111 + 22407834
GCUAUCCGAUCGUUACCGUUAUGGGAAACACCCACUUUUCUAGUUGUAUG----CCUUUCUUUUACUUUU-UUAACUUAGUAACGGUUAUAUGAUAGGAAAGCAAUUCGACCUAUC----
(((.(((.(((((.(((((((((((.....)))........(((((....----................-.)))))..))))))))...))))).))).))).............---- ( -26.90)
>DroSec_CAF1 7259 107 + 1
GGUAUCCAAUCGUUACCGAUAUAGGAAACACCCUCUUUUCUAGUUUUAUG----CCUCAC----ACUUCU-UUAACUUAGUAACGGUUAUAUGAUUGGAAAGAAAAUCAACCUAUC----
(((.(((((((((.((((...(((((((.......)))))))........----......----(((...-.......)))..))))...)))))))))..(.....).)))....---- ( -20.80)
>DroSim_CAF1 7268 107 + 1
GGUAUCCGAUCGUUACCGAUAUAGGAAACACCCUCUUUUCUAGUUUUAUG----CCUCAC----ACUUCU-UUAACGUAGUAACGGUUAUAUGAUUGGAAAGAAAAUCGACCUAUC----
(((.(((((((((.((((...(((((((.......)))))))........----......----(((.(.-.....).)))..))))...)))))))))..(.....).)))....---- ( -21.20)
>DroYak_CAF1 7107 111 + 1
G-----UGGUCGUGUCCGAUACGGGAAACACCCUCUUUUCUAGUUGUAUAUGUUCCUCGU----ACUCCUUUUAAUUAAGUAAUGGGUAUGCGAUAAGCCAGGGACUCGAUUUACAGAUU
(-----((((((.((((.(((((((.....))).((.....))..))))..(((..((((----(..(((.(((......))).)))..)))))..)))...)))).))).))))..... ( -27.10)
>consensus
GGUAUCCGAUCGUUACCGAUAUAGGAAACACCCUCUUUUCUAGUUGUAUG____CCUCAC____ACUUCU_UUAACUUAGUAACGGUUAUAUGAUAGGAAAGAAAAUCGACCUAUC____
....(((((((((.((((.(((.(....).....((.....))....................................))).))))...)))))))))..................... (-15.70 = -14.95 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:57 2006