Locus 765

Sequence ID 2L_DroMel_CAF1
Location 2,183,963 – 2,184,074
Length 111
Max. P 0.783103
window1256

overview

Window 6

Location 2,183,963 – 2,184,074
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.82
Mean single sequence MFE -36.04
Consensus MFE -25.75
Energy contribution -26.99
Covariance contribution 1.24
Combinations/Pair 1.09
Mean z-score -2.07
Structure conservation index 0.71
SVM decision value 0.56
SVM RNA-class probability 0.783103
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2183963 111 - 22407834
UUGCUGAGAUUCCCAUUAGGUGACCGAUAU-GAUGAUCAGGUGAUCGUUUA----GCACACAUCGAGGACCGAUCAACCUGUUCGACG----UCUUGGGAAUUUAUGGGAGUUUCGUUUA
.....(((((((((((.((((..((((.((-(.(((.((((((((((.((.----.(.......)..)).))))).))))).))).))----).))))..)))))))))))))))..... ( -42.30)
>DroSim_CAF1 25175 111 - 1
UUGCUGAGAUUCCCAUUAGGUGACCGAAAU-GAAGAUCAGGUGAUCGUUUA----GCAGACAUCGAGGACCGAUCAACCUGUUCGACG----UCUUGGGAAUUUAUGGGAGUUUCGUUUA
.....(((((((((((.((((..((((.((-(..((.((((((((((.((.----.(.......)..)).))))).))))).))..))----).))))..)))))))))))))))..... ( -42.20)
>DroEre_CAF1 28015 111 - 1
UCGCUGAGAUUCCCAUUAGGUGACCGAUAU-GGGGAUCGGGUGAACAUUUA----GCAGACUUCGAGGACCGAUCAACCUGCUCGACG----UCUUGGGAAUUUAUGGGAGUUUCGUUUA
.....(((((((((((.((((..((((.((-(..((.(((((((.(.....----...)...(((.....))))).))))).))..))----).))))..)))))))))))))))..... ( -34.60)
>DroYak_CAF1 28804 111 - 1
UCGCUGAGAUUCCCAUUAGGUGACCGAUAU-GAGGAUCGGGUGAACAUUUA----GCAGACUUUGAGGACCGAUCAACCUGUUCGACG----UCUUGGGAAUUUAUGUGUGUUUCGUUUA
.(((..((((((((((((((((.(((((..-....))))).....))))))----).((((.(((((.(..........).))))).)----))))))))))))..)))........... ( -27.00)
>DroAna_CAF1 28661 118 - 1
--GCCGAGAUUCCCAUUAGGUGACCGAUAUCGAGGAUCAAGUGAUCGUUUACCAGGCAGACAUUGAGGAUCGAUCAACCUGCUCGAUUUUCUUUAUGGGAAUUUAUGGGAAUUUAAUUUA
--....((((((((((.((((..((.(((..(((((((..((((....))))..(((((...((((.......)))).))))).)))))))..))).)).))))))))))))))...... ( -34.10)
>consensus
UCGCUGAGAUUCCCAUUAGGUGACCGAUAU_GAGGAUCAGGUGAUCGUUUA____GCAGACAUCGAGGACCGAUCAACCUGUUCGACG____UCUUGGGAAUUUAUGGGAGUUUCGUUUA
.....(((((((((((.((((..((((.......((.((((((((((.((.................)).))))).))))).))((......))))))..)))))))))))))))..... (-25.75 = -26.99 +   1.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:04 2006