Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,183,963 – 2,184,074 |
Length | 111 |
Max. P | 0.783103 |
Location | 2,183,963 – 2,184,074 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.82 |
Mean single sequence MFE | -36.04 |
Consensus MFE | -25.75 |
Energy contribution | -26.99 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.09 |
Mean z-score | -2.07 |
Structure conservation index | 0.71 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2183963 111 - 22407834 UUGCUGAGAUUCCCAUUAGGUGACCGAUAU-GAUGAUCAGGUGAUCGUUUA----GCACACAUCGAGGACCGAUCAACCUGUUCGACG----UCUUGGGAAUUUAUGGGAGUUUCGUUUA .....(((((((((((.((((..((((.((-(.(((.((((((((((.((.----.(.......)..)).))))).))))).))).))----).))))..)))))))))))))))..... ( -42.30) >DroSim_CAF1 25175 111 - 1 UUGCUGAGAUUCCCAUUAGGUGACCGAAAU-GAAGAUCAGGUGAUCGUUUA----GCAGACAUCGAGGACCGAUCAACCUGUUCGACG----UCUUGGGAAUUUAUGGGAGUUUCGUUUA .....(((((((((((.((((..((((.((-(..((.((((((((((.((.----.(.......)..)).))))).))))).))..))----).))))..)))))))))))))))..... ( -42.20) >DroEre_CAF1 28015 111 - 1 UCGCUGAGAUUCCCAUUAGGUGACCGAUAU-GGGGAUCGGGUGAACAUUUA----GCAGACUUCGAGGACCGAUCAACCUGCUCGACG----UCUUGGGAAUUUAUGGGAGUUUCGUUUA .....(((((((((((.((((..((((.((-(..((.(((((((.(.....----...)...(((.....))))).))))).))..))----).))))..)))))))))))))))..... ( -34.60) >DroYak_CAF1 28804 111 - 1 UCGCUGAGAUUCCCAUUAGGUGACCGAUAU-GAGGAUCGGGUGAACAUUUA----GCAGACUUUGAGGACCGAUCAACCUGUUCGACG----UCUUGGGAAUUUAUGUGUGUUUCGUUUA .(((..((((((((((((((((.(((((..-....))))).....))))))----).((((.(((((.(..........).))))).)----))))))))))))..)))........... ( -27.00) >DroAna_CAF1 28661 118 - 1 --GCCGAGAUUCCCAUUAGGUGACCGAUAUCGAGGAUCAAGUGAUCGUUUACCAGGCAGACAUUGAGGAUCGAUCAACCUGCUCGAUUUUCUUUAUGGGAAUUUAUGGGAAUUUAAUUUA --....((((((((((.((((..((.(((..(((((((..((((....))))..(((((...((((.......)))).))))).)))))))..))).)).))))))))))))))...... ( -34.10) >consensus UCGCUGAGAUUCCCAUUAGGUGACCGAUAU_GAGGAUCAGGUGAUCGUUUA____GCAGACAUCGAGGACCGAUCAACCUGUUCGACG____UCUUGGGAAUUUAUGGGAGUUUCGUUUA .....(((((((((((.((((..((((.......((.((((((((((.((.................)).))))).))))).))((......))))))..)))))))))))))))..... (-25.75 = -26.99 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:04 2006