Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,273,701 – 21,273,821 |
Length | 120 |
Max. P | 0.804194 |
Location | 21,273,701 – 21,273,821 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -31.02 |
Consensus MFE | -24.38 |
Energy contribution | -24.25 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.90 |
Structure conservation index | 0.79 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21273701 120 + 22407834 AGUCAAGAAUCUAGGCACUAAUUGCUGCUUUGCGUAUUUAUUGGUUGCCGGUUGCCCAUUUCUUGUAUAAAAAUAUGCUCAUCAGGCAUUUUGUACAAUUAGUGCUGAGCAGUUAGCAAA ....(((((....(((((((((...(((.....)))...))))).))))((....))..)))))(((((((...(((((.....))))))))))))......((((((....)))))).. ( -27.50) >DroSim_CAF1 14020 120 + 1 AGUCAAGAAUCUAGGCACUAAUUGCUGCUUUGCGUAUUUAUUGGUUGUCGGCUGCCCAUUUCUUGUAUAAAAAUAUGCUUAUUAGGCAUUUUGUACAAUUAGUGCUGAGCAGUUUGCAGA .((.(((......((((.....)))).))).))...........((((..((((((((((..(((((((((...(((((.....))))))))))))))..))))..).)))))..)))). ( -29.20) >DroEre_CAF1 12402 119 + 1 AGUCAAGAAUUUAGGCACUAAUUGCUGCUUUGCGGAUUUAUUGGUUGCCGGCUGCCCAUUUCUUGUAUAAAAAUAUGCUUAUUAGGCAUUUUGUACAAUUAGUGCUGCACAGU-UCUCGA ..((.((((((..(((((((((..((((...))))....))))).))))...(((.((((..(((((((((...(((((.....))))))))))))))..))))..))).)))-))).)) ( -33.30) >DroYak_CAF1 10968 120 + 1 AGUCAAGAGUUUAGGCACUAAUUGCUGCUUUGCGAAUUUAUUGUUUGCCGGCUGCCCAUUUCUUGUAUAAAAAUAUGCUUAUUAGUCAUUUUGUACAAUUAGUGCUGCACAGUUUCUUGA ..(((((((....((((((((((((.(((..((((((.....)))))).))).)).........((((((((....(((....)))..)))))))))))))))))).......))))))) ( -34.10) >consensus AGUCAAGAAUCUAGGCACUAAUUGCUGCUUUGCGUAUUUAUUGGUUGCCGGCUGCCCAUUUCUUGUAUAAAAAUAUGCUUAUUAGGCAUUUUGUACAAUUAGUGCUGAACAGUUUCCAGA .............((((((((((((.(((..(((...........))).))).)).........(((((((...(((((.....)))))))))))))))))))))).............. (-24.38 = -24.25 + -0.12)
Location | 21,273,701 – 21,273,821 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -26.59 |
Consensus MFE | -20.25 |
Energy contribution | -20.75 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.28 |
Structure conservation index | 0.76 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21273701 120 - 22407834 UUUGCUAACUGCUCAGCACUAAUUGUACAAAAUGCCUGAUGAGCAUAUUUUUAUACAAGAAAUGGGCAACCGGCAACCAAUAAAUACGCAAAGCAGCAAUUAGUGCCUAGAUUCUUGACU ...((.....))...(((((((((((......((((..........((((((.....))))))((....))))))............((...)).))))))))))).............. ( -26.90) >DroSim_CAF1 14020 120 - 1 UCUGCAAACUGCUCAGCACUAAUUGUACAAAAUGCCUAAUAAGCAUAUUUUUAUACAAGAAAUGGGCAGCCGACAACCAAUAAAUACGCAAAGCAGCAAUUAGUGCCUAGAUUCUUGACU ....(((....((..(((((((((((......((((((.......(((....))).......))))))...................((...)).)))))))))))..))....)))... ( -22.94) >DroEre_CAF1 12402 119 - 1 UCGAGA-ACUGUGCAGCACUAAUUGUACAAAAUGCCUAAUAAGCAUAUUUUUAUACAAGAAAUGGGCAGCCGGCAACCAAUAAAUCCGCAAAGCAGCAAUUAGUGCCUAAAUUCUUGACU ((((((-(.......(((((((((((......((((......((.(((((((.....))))))).))....))))............((...)).))))))))))).....))))))).. ( -29.20) >DroYak_CAF1 10968 120 - 1 UCAAGAAACUGUGCAGCACUAAUUGUACAAAAUGACUAAUAAGCAUAUUUUUAUACAAGAAAUGGGCAGCCGGCAAACAAUAAAUUCGCAAAGCAGCAAUUAGUGCCUAAACUCUUGACU ((((((....((...(((((((((((................((.(((((((.....))))))).)).((..((.............))...)).)))))))))))....)))))))).. ( -27.32) >consensus UCUACAAACUGCGCAGCACUAAUUGUACAAAAUGCCUAAUAAGCAUAUUUUUAUACAAGAAAUGGGCAGCCGGCAACCAAUAAAUACGCAAAGCAGCAAUUAGUGCCUAAAUUCUUGACU ...............(((((((((((......((((......((.(((((((.....))))))).))....))))............((...)).))))))))))).............. (-20.25 = -20.75 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:54 2006