Locus 7647

Sequence ID 2L_DroMel_CAF1
Location 21,273,248 – 21,273,368
Length 120
Max. P 0.555948
window12288

overview

Window 8

Location 21,273,248 – 21,273,368
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.22
Mean single sequence MFE -28.51
Consensus MFE -26.50
Energy contribution -26.07
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.51
Structure conservation index 0.93
SVM decision value 0.04
SVM RNA-class probability 0.555948
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21273248 120 - 22407834
UUUGCUUGCUUAUUAUCGAAAAGUAGAAACGUCUAGAUAUCUGGAAUUAAGUACAAGAGCUAAAAGAAUUAAGAAAGCAGAUUUUAGGGAAGCUUAGGCUGUGAAUGUUUGAUUGCCUUG
...((((.((((..(((.....(((......(((((....)))))......)))....(((..............))).)))..)))).))))..((((.((.(.....).)).)))).. ( -24.14)
>DroSec_CAF1 12388 120 - 1
UUUGCUUGCUUAUUAUCAAAAAAUAGAAACGUCUAGAUAUCUGGAAUUAGGUACAAGAGCUAGAAGAAUUAGGCAAGCAGAUCUUAGCGAAGCUUAGGCUGUACAAGUUUGAUUGCCGCG
((((((((((((...((..............(((((....))))).((((.(.....).))))..))..)))))))))))).....(((..(.(((((((.....))))))).)..))). ( -30.90)
>DroSim_CAF1 13586 120 - 1
UUUGCUUGCUUAUUAUCAAAAAAUAGAAACGUCUAGAUAUCUGGAAUUAAGUACAAGAGCUAAUAGAAUUAGGCAAGCAGAUCUUAGCGAAGCUUAGGCUGUACAAGUUUGAUUGCCGCG
((((((((((((...((..............(((((....)))))....(((......)))....))..)))))))))))).....(((..(.(((((((.....))))))).)..))). ( -30.50)
>consensus
UUUGCUUGCUUAUUAUCAAAAAAUAGAAACGUCUAGAUAUCUGGAAUUAAGUACAAGAGCUAAAAGAAUUAGGCAAGCAGAUCUUAGCGAAGCUUAGGCUGUACAAGUUUGAUUGCCGCG
((((((((((((...((..............(((((....)))))....(((......)))....))..)))))))))))).....(((..(.(((((((.....))))))).)..))). (-26.50 = -26.07 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:52 2006