Locus 7646

Sequence ID 2L_DroMel_CAF1
Location 21,261,911 – 21,262,070
Length 159
Max. P 0.837821
window12286 window12287

overview

Window 6

Location 21,261,911 – 21,262,031
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.17
Mean single sequence MFE -50.10
Consensus MFE -35.73
Energy contribution -35.27
Covariance contribution -0.46
Combinations/Pair 1.42
Mean z-score -1.30
Structure conservation index 0.71
SVM decision value 0.64
SVM RNA-class probability 0.807614
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21261911 120 - 22407834
ACUACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGGGUUCCGGGUAACGACUGAUUACCGGGGAUGCCGCCCAAAGUGACUCCACUACCGCCCAAGGAAACGGAUGCGCCACCGCUUC
...........((((((((.(.(((((....(((.((((((((.(((((.......))))).))))).))))))..((((....)))).)))))))))))...))).(((....)))... ( -43.50)
>DroVir_CAF1 153088 117 - 1
---ACUCACCCUCCUCCCUUGUGGCGGAGACGGGGCGCGUGACCGACGCCGACAUUGUGCUGGCCACACCGCCCAAAGUGGCGCCACUGCCGCCCAGAGGAAUGGCUGUGCCGCCACUGC
---.......((((.((.....)).))))...(((((.(((.(((.(((.......))).))).)))..)))))..(((((((.(((.(((.((....))...))).))).))))))).. ( -49.20)
>DroPse_CAF1 802 120 - 1
AGCUCUUACCCUCCUCCUUUGUGGAUGAAACGGGUCGCGUUCCCGGCAGCGACUGGUUGCUGGAGACGCCUCCCAGUGUGGCACCACUGCCGCCCAGGGGAAUGGCAUUGCCUCCGCUCC
(((.....(((((.(((.....))).))...(((..((((..((((((((.....))))))))..))))..))).(.((((((....)))))).).)))....(((...)))...))).. ( -50.60)
>DroGri_CAF1 47951 120 - 1
GACUCUUACCCUCCUCCUUUGUGCUGGAGGCGGGGCGUGUGCCCGGCGCAGUCAUUGGGAUGGCAACGCCGCCCAAAGUGGCGCCACUGCCGCCCAGGGGAAUGGCGGAGCCACCACUGC
((((....(((.(((((........))))).)))((((.......))))))))....((.((((..((((.(((...((((((....))))))....)))...))))..))))))..... ( -55.60)
>DroEre_CAF1 688 120 - 1
ACUACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGCGUUCCGGGUAGCGACUGAUUGCCGGGGAUGCCGCCCAAAGUGGCUCCACUACCGCCCAAGGGAACGGAUGCACCACCGCUUC
...........((((((((((.(((((....((((.(((((((.(((((.......))))).))))))).))))..((((....)))).))))))))))))..))).((......))... ( -51.20)
>DroPer_CAF1 802 120 - 1
AGCUCUUACCCUCCUCCUUUGUGGAUGAAACGGGUCGCGUUCCCGGCAGCGACUGGUUGCUGGAGACGCCUCCCAGUGUGGCGCCACUGCCGCCCAGGGGAAUGGCAUUGCCUCCGCUAC
(((.....(((((.(((.....))).))...(((..((((..((((((((.....))))))))..))))..))).(.((((((....)))))).).)))....(((...)))...))).. ( -50.50)
>consensus
ACCACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGCGUUCCCGGCAGCGACUGAUUGCUGGAGACGCCGCCCAAAGUGGCGCCACUGCCGCCCAGGGGAAUGGCUGUGCCACCGCUGC
....................(((((((....(((..(((((.(((((((.......))))))).)))))..)))...(((....))).((((((....))..))))....)))))))... (-35.73 = -35.27 +  -0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 21,261,951 – 21,262,070
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.33
Mean single sequence MFE -34.60
Consensus MFE -29.54
Energy contribution -29.02
Covariance contribution -0.52
Combinations/Pair 1.32
Mean z-score -1.18
Structure conservation index 0.85
SVM decision value 0.74
SVM RNA-class probability 0.837821
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21261951 119 - 22407834
AACUUUGUUCUACAAUAAAC-AAAAUCCUGAUUUGUAACUACUACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGGGUUCCGGGUAACGACUGAUUACCGGGGAUGCCGCCCAAAGUG
.((((((..(..((......-.....((((((((((..(((((((...............)))))))..))))))))))((((.(((((.......))))).))))))..)..)))))). ( -34.76)
>DroVir_CAF1 153128 98 - 1
---------UUGCUUUGAGU---UA----AAGAAUUA------ACUCACCCUCCUCCCUUGUGGCGGAGACGGGGCGCGUGACCGACGCCGACAUUGUGCUGGCCACACCGCCCAAAGUG
---------..(((((((((---((----(....)))------))))...((((.((.....)).))))...(((((.(((.(((.(((.......))).))).)))..)))))))))). ( -34.40)
>DroSec_CAF1 821 120 - 1
AACUAUGUUCUACGAUAAACCAAAAGCCUGAUUUAUAACUAAUACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGCGUUCCGGGUAACGACUGAUUACCGGGGAUGCCGCCCAAAGUG
..............(((((.((......)).)))))......(((((....(((.((.....)).)))...((((.(((((((.(((((.......))))).))))))).)))).))))) ( -34.50)
>DroSim_CAF1 734 120 - 1
AACUAUGUUCUACGAUAAACCAAAAGCCUGAUUUGUAACUAAUACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGCGUUCCGGGUAACGACUGAUUACCGGGGAUGCCGCCCAAAGUG
..............(((((.((......)).)))))......(((((....(((.((.....)).)))...((((.(((((((.(((((.......))))).))))))).)))).))))) ( -34.50)
>DroEre_CAF1 728 107 - 1
----------UUCUAGAAAC---AAGACUGAUUUCCAACUACUACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGCGUUCCGGGUAGCGACUGAUUGCCGGGGAUGCCGCCCAAAGUG
----------..........---...(((..((((((.((((..................)))))))))).((((.(((((((.(((((.......))))).))))))).))))..))). ( -34.57)
>DroYak_CAF1 729 118 - 1
AU--UUUUUUUUCAAUAAACCAAAAGCCUGAUUUCUAACCACUACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGCGUUCCGGGUAGCGACUGAUUGCCGGGGAUGCCGCCCAAAGUG
..--..................................(((((((...............)))))))....((((.(((((((.(((((.......))))).))))))).))))...... ( -34.86)
>consensus
AA___UGUUCUACAAUAAAC_AAAAGCCUGAUUUCUAACUACUACUUACCCUCCUCCUUUGUGGUGGAAACGGGUCGCGUUCCGGGUAACGACUGAUUACCGGGGAUGCCGCCCAAAGUG
...........................................((((....(((.((.....)).)))...((((.(((((((.(((((.......))))).))))))).)))).)))). (-29.54 = -29.02 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:51 2006