Locus 7645

Sequence ID 2L_DroMel_CAF1
Location 21,251,105 – 21,251,213
Length 108
Max. P 0.994426
window12284 window12285

overview

Window 4

Location 21,251,105 – 21,251,213
Length 108
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 93.52
Mean single sequence MFE -37.54
Consensus MFE -29.74
Energy contribution -30.02
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -3.26
Structure conservation index 0.79
SVM decision value 2.48
SVM RNA-class probability 0.994426
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21251105 108 + 22407834
---UUUUUCAAAGCACAAACAACUGCAGCACGACGUUCGUCGCCCUUCGGGAGCGGUUGUAUUGGUGUUCCG-UGCUGUUGUGUUUGUGCUACCACCUUGUUCGAUUUUAAU
---........((((((((((...((((((((((....)))((((....)).)).........((....)))-))))))..))))))))))..................... ( -39.30)
>DroSec_CAF1 2408 109 + 1
---UUUUUCAAAGCACAAACAACUGCAGCAUCACGUUCGACGCCCUUCGGGAGCAGUUGUAUUGGUGUUCUGCUGCUGUUGUGUUUGUGCUACCACCUUGUUCGAUUUUAAU
---........((((((((((((.((((((.(((...((((((((....)).)).)))).....)))...)))))).))..))))))))))..................... ( -37.50)
>DroSim_CAF1 5094 109 + 1
---UUUUUCAAAGCACAAACAACUGCAGCACCACGUUCGACGCCCUUCGGGAGCAGUUGUAUUGGUGUUCUGCUGCUGUUGUGUUUGUGCUACCACCUUGUUCGAUUUUAAU
---........((((((((((((.((((((.(((...((((((((....)).)).)))).....)))...)))))).))..))))))))))..................... ( -36.80)
>DroEre_CAF1 2328 112 + 1
AUAUUUUCCAGAGCACAAACAACUGCAGCACGACGUUCGACGCCCUUCGGGAGCAGUUGUAUUGGUGUUCUGCUGCUGUUGUGUUGGUGCUACCACCUUGUUCGAUUUUAAU
..........(((((...(((((.((((((.((((..((((((((....)).)).))))......)))).)))))).)))))...((((....)))).)))))......... ( -37.40)
>DroYak_CAF1 2448 111 + 1
AUAUU-UCCAAAGCACAAACAACUGCAGCACGACGUUCGACGCCCUUCGGGAGCAGUUGUAUUGGUGUUCUGCUGCUGUUGUGUUGGUGCUACCACCUUGUUUGAUUUCAAU
.....-.....(((((..(((((.((((((.((((..((((((((....)).)).))))......)))).)))))).)))))....)))))..................... ( -36.70)
>consensus
___UUUUUCAAAGCACAAACAACUGCAGCACGACGUUCGACGCCCUUCGGGAGCAGUUGUAUUGGUGUUCUGCUGCUGUUGUGUUUGUGCUACCACCUUGUUCGAUUUUAAU
...........((((((((((...((((((.......(((......)))((((((.(......).))))))..))))))..))))))))))..................... (-29.74 = -30.02 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 21,251,105 – 21,251,213
Length 108
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 93.52
Mean single sequence MFE -30.13
Consensus MFE -26.42
Energy contribution -26.70
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.87
Structure conservation index 0.88
SVM decision value 2.07
SVM RNA-class probability 0.987186
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21251105 108 - 22407834
AUUAAAAUCGAACAAGGUGGUAGCACAAACACAACAGCA-CGGAACACCAAUACAACCGCUCCCGAAGGGCGACGAACGUCGUGCUGCAGUUGUUUGUGCUUUGAAAAA---
..((..(((......)))..))((((((((((..(((((-(((....)).........((((.....))))(((....)))))))))..).))))))))).........--- ( -32.70)
>DroSec_CAF1 2408 109 - 1
AUUAAAAUCGAACAAGGUGGUAGCACAAACACAACAGCAGCAGAACACCAAUACAACUGCUCCCGAAGGGCGUCGAACGUGAUGCUGCAGUUGUUUGUGCUUUGAAAAA---
..((..(((......)))..))(((((((((..((.((((((..((............((((.....))))(.....)))..)))))).))))))))))).........--- ( -30.20)
>DroSim_CAF1 5094 109 - 1
AUUAAAAUCGAACAAGGUGGUAGCACAAACACAACAGCAGCAGAACACCAAUACAACUGCUCCCGAAGGGCGUCGAACGUGGUGCUGCAGUUGUUUGUGCUUUGAAAAA---
..((..(((......)))..))(((((((((..((.(((((.....((((.......(((((.....))))).......))))))))).))))))))))).........--- ( -30.34)
>DroEre_CAF1 2328 112 - 1
AUUAAAAUCGAACAAGGUGGUAGCACCAACACAACAGCAGCAGAACACCAAUACAACUGCUCCCGAAGGGCGUCGAACGUCGUGCUGCAGUUGUUUGUGCUCUGGAAAAUAU
.......((......((((....)))).............((((.(((....((((((((......(.((((.....)))).)...))))))))..))).))))))...... ( -29.60)
>DroYak_CAF1 2448 111 - 1
AUUGAAAUCAAACAAGGUGGUAGCACCAACACAACAGCAGCAGAACACCAAUACAACUGCUCCCGAAGGGCGUCGAACGUCGUGCUGCAGUUGUUUGUGCUUUGGA-AAUAU
.(..((..(((((((((((....)))).........((((((..((............((((.....))))(.....)))..))))))..)))))))...))..).-..... ( -27.80)
>consensus
AUUAAAAUCGAACAAGGUGGUAGCACAAACACAACAGCAGCAGAACACCAAUACAACUGCUCCCGAAGGGCGUCGAACGUCGUGCUGCAGUUGUUUGUGCUUUGAAAAA___
..((..(((......)))..))(((((((((..((.((((((..((............((((.....))))(.....)))..)))))).)))))))))))............ (-26.42 = -26.70 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:48 2006