Locus 7644

Sequence ID 2L_DroMel_CAF1
Location 21,250,824 – 21,250,926
Length 102
Max. P 0.575794
window12283

overview

Window 3

Location 21,250,824 – 21,250,926
Length 102
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 83.46
Mean single sequence MFE -25.24
Consensus MFE -19.10
Energy contribution -18.46
Covariance contribution -0.64
Combinations/Pair 1.35
Mean z-score -1.58
Structure conservation index 0.76
SVM decision value 0.08
SVM RNA-class probability 0.575794
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21250824 102 - 22407834
AUAUCCCCAGCGCAACGAUACAGAUUUGUUUUCUGGUCUAUAAAUCGCAUUUUGCAAAUCUCGUUCGUUUGAAACAAAGCGACUGGGAAAAUGUAUGCCUCA-----------------
.....(((((((((((((.((((((((((....((((......))))......)))))))).))))))).........))).)))))...............----------------- ( -24.70)
>DroSec_CAF1 2120 102 - 1
AUAUCCCCAGCACAACGAUACAGAUUUGUUUUCAGGUCUACAAAUCGCAUUUUGCGAAUCUCGUUCGUUUGAAACAAAGCGACUAGGAAAUUGUAUGCCUCA-----------------
.........(((..(((((..(((((((....))))))).....((((.....)))).((..(.((((((......)))))).)..)).))))).)))....----------------- ( -21.70)
>DroSim_CAF1 4801 119 - 1
AUAUCCCCAGCACAACGAUACAGAUUUGUUUUCAGGUCUACAAAUCGCAUUUUGCGAAUCUCGUUCGUUUGAAACAAAGCGACUGGGAAAUUGUAUGCCUCACUGCUUGGCANNNNNNN
.....((.((((.(((((.......)))))...((((.(((((.((((.....)))).(((((.((((((......)))))).)))))..))))).))))...)))).))......... ( -31.60)
>DroEre_CAF1 2059 102 - 1
AUAUCCGUCGCACAGCGAUACAGAUUCGUUUUCAGCUCUGCAAUUCGCAUUUUGCGAAUUUCGUUCGCUUGAAACAAAGCGACUGGGAAAUCGUAUGCCUCA-----------------
...((((((((.....((.......))(((((.(((..((.(((((((.....))))))).))...))).)))))...))))).)))...............----------------- ( -27.00)
>DroYak_CAF1 2181 102 - 1
AUAUCCCCCGCACAGCAAUACAGAUGCGUUUUCAGCUUUGUAAUUCGCAUUUUGCGAAUUUCGUUCGUUUGAAAUAAUACGACUGGAAAAUUGUAUGCCUCA-----------------
..............(((.(((((.....(((((((..(((((..((((.....))))((((((......))))))..)))))))))))).))))))))....----------------- ( -21.20)
>consensus
AUAUCCCCAGCACAACGAUACAGAUUUGUUUUCAGGUCUACAAAUCGCAUUUUGCGAAUCUCGUUCGUUUGAAACAAAGCGACUGGGAAAUUGUAUGCCUCA_________________
.........(((..(((((.........................((((.....)))).(((((.((((((......)))))).))))).))))).)))..................... (-19.10 = -18.46 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:47 2006