Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,225,863 – 21,225,969 |
Length | 106 |
Max. P | 0.537230 |
Location | 21,225,863 – 21,225,969 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 79.70 |
Mean single sequence MFE | -23.85 |
Consensus MFE | -18.90 |
Energy contribution | -20.15 |
Covariance contribution | 1.26 |
Combinations/Pair | 1.25 |
Mean z-score | -1.00 |
Structure conservation index | 0.79 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21225863 106 + 22407834 UAAUUCACAGGUGAAAAAU-----------C--CGAUAUUUGUCGUGCAAUAAUUUCCUCGAUUGGCAUCAAGUGGCUUCCAGUCGGGUACAUAUUGCACAAGAAAUGUUAUACGCAUA ...((((....))))....-----------.--.(((((((.(.((((((((....((.(((((((..((....))...)))))))))....)))))))).).)))))))......... ( -28.80) >DroPse_CAF1 23039 111 + 1 UAAUUCACAGGUGAAAAAUCAACGCUGCGACUGCAA-UUUUCUCGUGCAAUAAUUUUCGGAAAA-----UCCACGCCACCCAAAA--GCCCCCAUUGUGCAAAAAGGAAUCUACACAAA .........((((..........((.((((......-.....))))))..........((....-----.)).))))........--.......(((((..............))))). ( -13.94) >DroSec_CAF1 16447 106 + 1 UAAUUCACAGGUGAAAAAU-----------C--CGAUAUUUGUCGUGCAAUUUUUUCCUCGAUUGGCAUUGAGUGGCUUCCAGUCGGGCACAUAUUGCACAAGAAAUGUUAUACGCAAA ...((((....))))....-----------.--.(((((((.(.(((((((......(((((((((.............))))))))).....))))))).).)))))))......... ( -26.52) >DroSim_CAF1 16588 106 + 1 UAAUUCACAGGUGAAAAAU-----------C--CGAUAUUUGUCGUGCAAUUAUUUCCUCGAUUGGCAUUGAGUGGCUUCCAGUCGGGCACAUAUUGCACAAGAAAUGUUAUACGCAGA ...((((....))))....-----------.--.(((((((.(.(((((((......(((((((((.............))))))))).....))))))).).)))))))......... ( -26.52) >DroEre_CAF1 17259 106 + 1 UAAUUCACAGGUGAAAAAU-----------C--CGAUAUUUGUCGUGCAAUAAUUUCCUCGAUUGGCAUCGAGUGGCUUCCAGUCGGGCACAUAAUGCACAAGAAAUGUUAUACGCAGA ...((((....))))....-----------.--.(((((((.(.(((((.((.....(((((((((..((....))...)))))))))....)).))))).).)))))))......... ( -23.90) >DroYak_CAF1 16886 104 + 1 UAAUUCACAGGUGAA-AAU-----------C--CGAUAU-UGUCGUGCAAUAAUUUUCCCGAUUGCCAUCGAGUGGCUUCCAGUCGGGCACAUAAUGCAUAAGAAAUGUUAUACGCAAA ...((((....))))-...-----------.--.(((((-(...(((((.((.....((((((((((((...)))))....)))))))....)).)))))....))))))......... ( -23.40) >consensus UAAUUCACAGGUGAAAAAU___________C__CGAUAUUUGUCGUGCAAUAAUUUCCUCGAUUGGCAUCGAGUGGCUUCCAGUCGGGCACAUAUUGCACAAGAAAUGUUAUACGCAAA ...((((....))))...................(((((((.(.(((((((......(((((((((.............))))))))).....))))))).).)))))))......... (-18.90 = -20.15 + 1.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:46 2006