| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,219,810 – 21,219,919 |
| Length | 109 |
| Max. P | 0.757244 |
| Location | 21,219,810 – 21,219,919 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.32 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.94 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21219810 109 + 22407834 UUCU---CUCAUAUUCGCUAAAUUUAUUCGUUGAGUGGCUAGCGUUAACGACAUCUCUUUGCGAAAAUUUGCCAACGCAGUUAUGGCCUACACCUCAGGUCAUCUUUGUAUA ....---......(((((.........(((((((((.....)).))))))).........)))))...........((((..(((((((.......)))))))..))))... ( -24.07) >DroSec_CAF1 10198 95 + 1 UUCU---CUC----------AAUUUAUUCGUUGAGUA----GCGUUAACGACAGCUCUUAGCGAAAACUUGCCAACGCAGUUAUGGCCUACACCUCGGGUCAUCUUUCUAUA ....---...----------......(((((((((.(----(((((...))).))))))))))))((((.((....))))))(((((((.......)))))))......... ( -23.30) >DroSim_CAF1 10201 96 + 1 UUCU---CUC----------AAUUUAUUCGUUGAGUA---AGCGUUAACGACAGCUCUUAGCGAAAACUUGCCAACGCAGUUAUGGCCUACACCUCAGGUCAUCUUUCUAUA ....---...----------......(((((((((..---((((((...))).))))))))))))((((.((....))))))(((((((.......)))))))......... ( -21.40) >DroEre_CAF1 10984 106 + 1 UUCUCCUCUCAUAUUCGCUGUAUUCAUGCGUUGAGUG----GCAUUAACGAAAGCUCUUGGCGAAAAUG-GCCAACGCAGUUGUGGCCUACACCU-AGGUCAUCUCUGGAUA ....((.((((....(((((....)).))).)))).)----)......(....)...(((((.......-)))))..(((..((((((((....)-)))))))..))).... ( -29.90) >DroYak_CAF1 10291 97 + 1 UUCU---CUCAUA--------AAACCUGCGUUGAAUG----GCAUUAACGAAAGCUCUUAGCGAAAAUAUGCCAACGCAGUUAUGGCCAACACCUUUGGUCAUCUUUGUAUA ....---...(((--------((..((((((....((----((((........((.....))......))))))))))))..((((((((.....)))))))).)))))... ( -25.64) >consensus UUCU___CUCAUA_______AAUUUAUUCGUUGAGUG____GCGUUAACGACAGCUCUUAGCGAAAAUUUGCCAACGCAGUUAUGGCCUACACCUCAGGUCAUCUUUGUAUA ............................(((((.(((.....((((((.((....))))))))......))))))))(((..(((((((.......)))))))..))).... (-15.58 = -15.94 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:43 2006