Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,216,974 – 21,217,085 |
Length | 111 |
Max. P | 0.570787 |
Location | 21,216,974 – 21,217,085 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.54 |
Mean single sequence MFE | -38.07 |
Consensus MFE | -19.91 |
Energy contribution | -20.67 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.17 |
Mean z-score | -1.97 |
Structure conservation index | 0.52 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21216974 111 + 22407834 ACAGCAUCGGGUAACCCAGCUUCUGAUCCGAAACCAAGGGGUAGACGAAAAAAGGUUACACCCCUUAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACGGCU ...((...(((...))).(((((((..(.((..(((((((((.(((........)))..))))))).))..)).)...)))))))........))(((((......))))) ( -40.80) >DroVir_CAF1 8659 96 + 1 C---------------CAGCGCCCGAUUCCAAGCCGCGUGGUCGCCGAAAAAAGGUGACGCCUCUGCGGGAUCAACUGCAGAAGCAGCAAACCGCUGCCGCUGUCACCGCC .---------------..(((((((...........)).)).)))........((((((((.(((((((......))))))).(((((.....))))).)).))))))... ( -37.70) >DroSec_CAF1 7101 111 + 1 ACAGCUUCGGGUAACCCAGCGCCUGAUCCGAAACCAAGGGGUCGACGAAAAAAGGUUACACCUCUAAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACAGCU ...((((((((...))).(((.((((((((....).((((((.(((........)))..))))))...))))))).))).)))))....((((((....))))))...... ( -39.30) >DroSim_CAF1 7170 111 + 1 ACAGCUUCGGGUAACCCAGCGCCUGAACCGAAACCAAGGGGUCGACGAAAAAAGGUUACACCUCUAAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACAGCU ...((((((((...))).(((.((((.(((....).((((((.(((........)))..))))))...)).)))).))).)))))....((((((....))))))...... ( -34.70) >DroYak_CAF1 7133 111 + 1 ACAGUCUCGGGAAGCCCAGCGCCUGAUCCGAAACCGAGGGGUAGACGAAAAAAGGUUACACCUCUCAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACGGCG ........(((...)))..(((((((((((....)(((((((.(((........)))..)))))))..))))))(((((....)))))....))))((((......)))). ( -41.40) >DroMoj_CAF1 7946 108 + 1 CCCGGAACAG---GCCCACCACCUGAUACCAAGCCGCGUGGUCGUCGAAAAAAGGUAACGCCUCUGCGGGAUCAGCUGCAGAAGCAGCAAACCGCCGCAGCUGUCACAGCG ...((..(((---(.......))))...))..((.((((((((.(((...(.(((.....))).).))))))))(((((....)))))....))).)).((((...)))). ( -34.50) >consensus ACAGCAUCGGGUAACCCAGCGCCUGAUCCGAAACCAAGGGGUCGACGAAAAAAGGUUACACCUCUAAGGGAUCAGUUGCAGAAGCAACAAACGGCGGCCGCUGUUACAGCU ................(((((((((((((...(((....)))..........(((.....))).....))))))(((((....))))).......)).)))))........ (-19.91 = -20.67 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:42 2006