| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,216,024 – 21,216,138 |
| Length | 114 |
| Max. P | 0.575470 |
| Location | 21,216,024 – 21,216,138 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.87 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -25.43 |
| Energy contribution | -25.57 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21216024 114 - 22407834 GCCGCUGGAUGAAUUUUUGACGCUCCUCAGGUGGCGUAUCCGGCCGAUGCACGCCAGGUUUAAUGCCGCCGUCAGAGCUGUCGUCGUCUACGUAAAGAGAGGAAAAAUUAAAUC ..((.(((((((.....((((((((....((((((((..(((((........))).))....))))))))....)))).)))))))))))))...................... ( -36.30) >DroVir_CAF1 7637 90 - 1 GCUUCUGUAUGAACUUCUGACGCUCCUCGGGCGGUGUAUCCGGUCGCUGUACGCCCGGCUUAAUGCCGCCAUCGGAGCUAUCGUCAUCAA------------------------ .................(((((((((...((((((((..((((.((.....)).))))....))))))))...)))))....))))....------------------------ ( -32.40) >DroPse_CAF1 7325 90 - 1 GCUUCUGGAUGAACUUCUGUCGCUCCUCGGGCGGUGUGUCGGGACGAUGGACCCCCGGCUUGAUGCCGCCGUCCGAGCUGUCGUCGUCAA------------------------ .......(((((((....))(((..((((((((((((((((((....(((....))).))))))).)))))))))))..).)))))))..------------------------ ( -34.90) >DroGri_CAF1 7365 90 - 1 GCUUUUGGAUGAACUUCUGACGCUCCUCGGGCGGUGUGUCGGGUCGCUGGACGCCCGGCUUGAUGCCGCCAUCGGAGCUGUCGUCGUCAA------------------------ .......(((((.....(((((((((...((((((((((((((.((.....))))))))...))))))))...))))).)))))))))..------------------------ ( -42.00) >DroMoj_CAF1 6981 90 - 1 GCUUCUGGAUAAACUUCUGCCGUUCCUCGGGUGGUGUGUCCGGACGCUGUACUCCUGGCUUGAUGCCGCCAUCGGAGCUGUCAUCGUCAA------------------------ ((.((((((((.(((....(((.....)))..))).)))))))).))....((((((((........))))..)))).............------------------------ ( -28.70) >DroAna_CAF1 5898 108 - 1 GCCGCUGGAUGAACUUCUGCCGCUCCUCGGGCGGAGUGUCUGGCCUGUGGACGCCAGGCUUGAUGCCUCCAUCGGAGCUGUCGUCAUCUGCAUUG-GACAGAAAACAUU----- .(((.((((......((((((........))))))(((((.((((((.(....))))))).))))).)))).)))..(((((.............-)))))........----- ( -37.52) >consensus GCUUCUGGAUGAACUUCUGACGCUCCUCGGGCGGUGUGUCCGGACGCUGGACGCCCGGCUUGAUGCCGCCAUCGGAGCUGUCGUCGUCAA________________________ .......(((((.........(((((...(((((((((((.(((........))).)))...))))))))...))))).....))))).......................... (-25.43 = -25.57 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:41 2006