Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,215,516 – 21,215,636 |
Length | 120 |
Max. P | 0.792605 |
Location | 21,215,516 – 21,215,636 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.50 |
Mean single sequence MFE | -42.60 |
Consensus MFE | -33.83 |
Energy contribution | -32.83 |
Covariance contribution | -0.99 |
Combinations/Pair | 1.55 |
Mean z-score | -2.27 |
Structure conservation index | 0.79 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21215516 120 - 22407834 CAGCCUGGGUGGCUAGCUUCUUUAGCUUAGGUGAUUUUCUGGCGAUGCCACCCGACGAAUUCGACUUCUUUGCGGCCACCGUCUUUUUCUUUUUGGAAGAAGGAUUCCAGGCACCAUCCU ..((((((((((((((((.....))))...(..(.....((((...))))..(((.....)))......)..)))))))).(((((((((....)))))))))....)))))........ ( -39.20) >DroSec_CAF1 5648 120 - 1 CAGCCUGGGUGGCUAGCUUCUUUAGCUUGGGUGACUUUCUGGCGAUGCCACCCGACGAAUUCGACUUCUUCGCGGCCACCGUCUUCUUUUUUUUAGAAGAAGGAUUCCAGGCACCAUCCU ..((((((((((((((((.....)))).(((((.(..((....)).).)))))((.(((......))).))..))))))).(((((((((....)))))))))....)))))........ ( -43.40) >DroSim_CAF1 5716 120 - 1 CAGCCUGGGUGGCUAGCUUCUUUAGCUUGGGUGACUUUCUGGCGAUGCCACCCGACGAAUUCGACUUCUUCGCGGCCACCGUCUUCUUCUUUUUAGAAGAAGGAUUCCAGGCACCAUCCU ..((((((((((((((((.....)))).(((((.(..((....)).).)))))((.(((......))).))..))))))).(((((((((....)))))))))....)))))........ ( -46.00) >DroEre_CAF1 5862 120 - 1 CAGCCUGGUUGGCUAGCUUCUUCAGUUUGGGUGACUUUCUGGCGAUGGCGCCCGACGAAUUCGACUUCUUAGCAGCAACCGUCUUCUUUUUUUUUGAGGAAGGAUUCCAGGCACCAUCUU ..((((((...(((.(((.....((((((((((.((.((....)).)))))))))((....)))))....))))))..((.(((((.........))))).))...))))))........ ( -38.30) >DroYak_CAF1 5677 120 - 1 CAGCCUGGGUGGCUAGCUUCUUUAGUUUGGGUGACUUUCUGGCGAUGCCAUCCGACGAAUUCGUCUUCUUAGCAGCCACCGUCUUCUUCUUUUUUGAGGAAGGAUUCCAGGCACCAUCUU ..((((((((((((.(((..........(((((.(..((....)).).)))))((((....)))).....)))))))))).((((((((......))))))))....)))))........ ( -46.80) >DroAna_CAF1 5447 117 - 1 CUGUCUGGGUAAAGGGUUUCUUCAGCUUGGGCGACUUCCGGGCAAUGCCGCUC---GCAUUGGACUUCUUGGCGCCGCUUGCCUUCUUGCGCUUGGAGGAGGGACGCCAGGCACCGUCCU .((((..(((..(((....)))..)))..)))).....(((((......))))---)....((((..(((((((((.((..(((((........))))))))).)))))))....)))). ( -41.90) >consensus CAGCCUGGGUGGCUAGCUUCUUUAGCUUGGGUGACUUUCUGGCGAUGCCACCCGACGAAUUCGACUUCUUAGCGGCCACCGUCUUCUUCUUUUUAGAAGAAGGAUUCCAGGCACCAUCCU ..((((((((((((((((.....))))((((((.(...........).))))))...................))))))).((((((((......))))))))....)))))........ (-33.83 = -32.83 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:40 2006