Locus 7637

Sequence ID 2L_DroMel_CAF1
Location 21,215,373 – 21,215,476
Length 103
Max. P 0.575550
window12275

overview

Window 5

Location 21,215,373 – 21,215,476
Length 103
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 83.04
Mean single sequence MFE -20.80
Consensus MFE -14.75
Energy contribution -14.20
Covariance contribution -0.55
Combinations/Pair 1.33
Mean z-score -1.68
Structure conservation index 0.71
SVM decision value 0.08
SVM RNA-class probability 0.575550
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21215373 103 + 22407834
UCAGAAGAG----ACGGACUACAAAGUCAAAAAAG---AAGAAAGACGAUUCUGACUAUACAGAAACGGAAACGGAAGAUGACGAUGAUAAU------GAGUUGUCCGAUAACGUG
.........----.(((((.((...((((......---...........(((((......))))).((....)).....)))).((....))------..)).)))))........ ( -20.20)
>DroSec_CAF1 5505 103 + 1
UCAGAAGCG----ACGGAUUACAAAGUCAAAAAAA---AAGAAAGACGAUUCUGACUAUACAGAAACGGAAACGGAAGAUGACGAUGAUAAU------GAGUUGUCCGAUAACGUG
......(((----((..((((((..((((......---...........(((((......))))).((....)).....))))..)).))))------..)))))........... ( -20.20)
>DroSim_CAF1 5573 103 + 1
UCAGAAGCG----ACGGAGUACAAAGUCAAAAAAA---AAGAAAGACGAUUCUGACUAUACAGAAACGGAAACGGAAGAUGACGAUGAUAAU------GAGUUGUCCGAUAACGUG
......(((----((....((((..((((......---...........(((((......))))).((....)).....))))..)).))..------..)))))........... ( -17.80)
>DroEre_CAF1 5719 103 + 1
UCAGAAGCG----ACGAGCUACAAAGUCAAAAAAG---AAGAAGGAUGAUUCUGAAUAUACAGAGACGGAAACGGAAGAUGACGACGAUAAU------GAAUUGUCCGAUAACGUG
...(.(((.----....))).)...((((......---...........(((((......))))).((....)).....))))((((((...------..)))))).......... ( -19.40)
>DroYak_CAF1 5534 103 + 1
UCAGAAGCG----ACGGGCUACAAAGUCAAAAAAA---AAAAAGGACGAUUCUGAAUAUACAGAAACGGAAACGGAAGAUGACGACGAUAAU------GAGUUGUCCGAUAACGUA
......(((----.(((((......((((......---...........(((((......))))).((....)).....))))(((......------..))))))))....))). ( -21.40)
>DroMoj_CAF1 6415 112 + 1
ACAGAAACGCUCCAAGU-CUAAAAAAUCUCAUAAAAAGAAGAAAGAGGAUUCCGAUUAUACGGAAACCGAAACGGACGACGA---UGACAACGGGUCGGAGCUGUCGGAGAACAUG
...((...(((((..((-((......(((.......))).......((.(((((......))))).)).....)))).....---.(((.....))))))))..)).......... ( -25.80)
>consensus
UCAGAAGCG____ACGGACUACAAAGUCAAAAAAA___AAGAAAGACGAUUCUGACUAUACAGAAACGGAAACGGAAGAUGACGAUGAUAAU______GAGUUGUCCGAUAACGUG
.............(((.........((((.................((.(((((......))))).))....(....).))))...((((((........))))))......))). (-14.75 = -14.20 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:39 2006