Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,214,912 – 21,215,018 |
Length | 106 |
Max. P | 0.512936 |
Location | 21,214,912 – 21,215,018 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 84.04 |
Mean single sequence MFE | -23.69 |
Consensus MFE | -16.20 |
Energy contribution | -16.82 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.12 |
Mean z-score | -2.00 |
Structure conservation index | 0.68 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21214912 106 - 22407834 CCUUCUCA---------CCGUCUUCCUUAUUCCCCACUUCAUCCUCCGUAGGCAGAUCAUCACGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCUUUGCCGCG ........---------.............................(((((((((((......))).)))))......((((((((........))))))))..........))) ( -20.60) >DroPse_CAF1 6334 112 - 1 CCUUUACGGAGGCAGGAGCCUUCUCCUCGGGCUCCUCCUCAUCCUCU---GGCAAGUCAUCACGUCGCGCCUUCUCCUUGUCCGCCUCGAUAAUGGUGGAAAUGUCCUUGCCACG ......((((((.((((((((.......))))))))))))......(---((((((.(((...(.....)..........((((((........)))))).)))..))))))))) ( -39.40) >DroSec_CAF1 5044 106 - 1 CCUUCUCA---------CCGUCUUCCUUAUUCUCCACUUCACCCUCCGUAGGCAGAUCAUCGCGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCUUUGCCUCG ........---------.............................((.(((((((.....((.....))........((((((((........))))))))....))))))))) ( -21.70) >DroSim_CAF1 5112 106 - 1 CCUUCUCA---------CCGUCUUCCUUAUUCUCCACUUCACCCUCCGUAGGCAGAUCAUCGCGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCUUUGCCUCG ........---------.............................((.(((((((.....((.....))........((((((((........))))))))....))))))))) ( -21.70) >DroEre_CAF1 5258 106 - 1 CCUUCUCA---------CCGUCUUCCUUUUCCUCCACAUCUCCCUCCGUUUGCAAAUCAUCGCGACGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCCUUGCCGCG ........---------................................((((........))))((((.(.......((((((((........)))))))).......).)))) ( -18.14) >DroYak_CAF1 5073 106 - 1 CCUUCUCA---------CCGUCUUCCUUUUCCUUCACAUCGUUCUCCGUAGGCAGAUCAUCGCGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCCUUGCCGCG ........---------.............................(((((((((((......))).)))))......((((((((........))))))))..........))) ( -20.60) >consensus CCUUCUCA_________CCGUCUUCCUUAUUCUCCACUUCACCCUCCGUAGGCAGAUCAUCGCGUCGUGCCUUUUCCUUAUCCGCCUCAAUAAUGGUGGAUAUGUCCUUGCCGCG ..................................................((((((.....((.....))........((((((((........))))))))....))))))... (-16.20 = -16.82 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:38 2006