Locus 7635

Sequence ID 2L_DroMel_CAF1
Location 21,214,292 – 21,214,412
Length 120
Max. P 0.574960
window12273

overview

Window 3

Location 21,214,292 – 21,214,412
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.50
Mean single sequence MFE -39.73
Consensus MFE -26.30
Energy contribution -25.31
Covariance contribution -0.99
Combinations/Pair 1.33
Mean z-score -1.53
Structure conservation index 0.66
SVM decision value 0.08
SVM RNA-class probability 0.574960
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21214292 120 + 22407834
CGCCUACCUGUAACAAAGGAUACCACUGCUCCUGCCUUUCACCAGUGCUCUUCUACAUUCCUGAGGGCGAUUGGCACUGCCCUCCUUGUCAGCAGGAGCAGCUCAUAGCUGCCCUGGAGA
..((..(((((....(((((...((.((((..((((((.((..((((........))))..))))))))...)))).))...)))))....))))).(((((.....)))))...))... ( -37.20)
>DroVir_CAF1 4749 120 + 1
CGCCCGGCUGCAACAAAGGCUAUCACUGCUCCUGUCUCAGUCCCGUGCUUUUCUACAUACCCGAGGGCGAUUGGCACUGUCCGCCCUGCCAGCAGGAGCAGCUCAUCGUUGCCCUCGAGC
.((.((((((..(((..(((.......)))..)))..)))..))).)).............((((((((((.((......))((((((....)))).))........))))))))))... ( -40.70)
>DroGri_CAF1 5121 120 + 1
CGCCCGACUGCAACAAGGGCUAUCACUGCUCCUGCCUCAGCCCCGUCCUCUUCUACAUACCCGAGGGCGACUGGCACUGUCCACCCUGUCAGCAGGAGCAGCUCAUCGUCGCCCUCCAGC
.((......))....(((((.((..((((((((((........(((((((............)))))))..(((((..(....)..)))))))))))))))......)).)))))..... ( -40.90)
>DroWil_CAF1 4633 120 + 1
CUCCCGACUGUAAUAAGGGCUAUCAUUGUUCUUGUCUAUCACCGGUUUUAUUCUAUAUCCCCGAAGGCGAUUGGCAUUGUCCACCCUGUCAGCAGGAGCAUCUAAUAGUUGCCCUCGAGA
((((((...(((((((((((.......)))))))).)))...))).................((.((((((((....(((....((((....)))).))).....)))))))).))))). ( -29.70)
>DroMoj_CAF1 4740 120 + 1
CGCCCGGCUGCAACAAAGGCUAUCAUUGUUCCUGUCUCAGUCCCGUGCUCUUCUAUAUACCCGAGGGCGAUUGGCAUUGUCCGCCCUGCCAGCAGGAGCAGCUCAUCGCUGCCCUGGAAC
((((((((((..(((..(((.......)))..)))..)))))..(((..........)))....))))).((((((..(....)..))))))((((.(((((.....))))))))).... ( -39.60)
>DroAna_CAF1 4211 120 + 1
CUCCGGCCUGCAACAAGGGCUACCACUGCUCCUGCCUUUCGCCGGUCCUCUUCUACAUACCUGAGGGCGACUGGCACUGCCCGCCCUGCCAGCAGGAGCAGCUUAUUGCGGCUCUAGAGC
(((.((((.((((...((....)).((((((((((.....(((((((.(((((.........))))).)))))))...((.......))..))))))))))....))))))))...))). ( -50.30)
>consensus
CGCCCGACUGCAACAAAGGCUAUCACUGCUCCUGCCUCACACCCGUGCUCUUCUACAUACCCGAGGGCGAUUGGCACUGUCCGCCCUGCCAGCAGGAGCAGCUCAUCGCUGCCCUCGAGC
.................(((.....((((((((((.........((.(((............))).))...(((((..(....)..))))))))))))))).........)))....... (-26.30 = -25.31 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:37 2006