Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,212,050 – 21,212,148 |
Length | 98 |
Max. P | 0.944268 |
Location | 21,212,050 – 21,212,148 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 76.98 |
Mean single sequence MFE | -20.26 |
Consensus MFE | -8.98 |
Energy contribution | -10.18 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.24 |
Mean z-score | -2.27 |
Structure conservation index | 0.44 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944268 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21212050 98 + 22407834 AGCGCUAAGGAAUCAGUAUCUGAAUCUUCUCCAACGGAUGGGGAAGAUGAAACAGCAAAAUCGAAAUGUUUGAUUGACCCUUAUGCAGGAAAAACCAA .(((.(((((..(((((......((((((((((.....)))))))))).(((((.(......)...))))).))))).)))))))).((.....)).. ( -26.70) >DroSec_CAF1 2026 83 + 1 AGCGCUA---------------AAUCUUCUUCAACGGAUGGGGAAGAUGAAACAGCAAAAUCAAAAUGUUUGAUUGACCCUUAUGCAGGAAAAAGCAA .(((((.---------------.((((((((((.....)))))))))).....)))..((((((.....))))))...(((.....))).....)).. ( -19.40) >DroSim_CAF1 2105 83 + 1 AGCGCUA---------------AAUCUUCUUCAACGGAUGGGGAAGAUGAAACAGCAAAAUCAAAAUGUUUGAUUGACCCUUAUGCAGGAAAAAGCAA .(((((.---------------.((((((((((.....)))))))))).....)))..((((((.....))))))...(((.....))).....)).. ( -19.40) >DroEre_CAF1 2030 98 + 1 AGCGCUAAAGAAUCAAUGUCUAGAUCUUCUUCAAAGGAAGUGGAAGAUGAAACCGCUAACUCGAAAUGUUUAAGUGACCCUUUUGCAGGAAAAACCAA ...((.((((..(((...((((...(((((.....)))))))))...)))...(((((((.......)))..))))...)))).)).((.....)).. ( -15.60) >DroYak_CAF1 2015 83 + 1 GGCGCUAAAGAAU---------------CUUUAAAGGAAGUGAAAGAUGAAACAGUUAAAUCGAAAUGUUUAAUUGAAUCUUUUGCAGAAAAAGCCAA (((.........(---------------((.....))).(..((((((....(((((((((......))))))))).))))))..).......))).. ( -20.20) >consensus AGCGCUAA_GAAU_________AAUCUUCUUCAACGGAUGGGGAAGAUGAAACAGCAAAAUCGAAAUGUUUGAUUGACCCUUAUGCAGGAAAAACCAA .((....................(((((((((.......)))))))))..........((((((.....)))))).........))............ ( -8.98 = -10.18 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:33 2006