Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,202,607 – 21,202,724 |
Length | 117 |
Max. P | 0.892714 |
Location | 21,202,607 – 21,202,724 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.32 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -28.69 |
Energy contribution | -28.58 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.87 |
Structure conservation index | 0.88 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21202607 117 + 22407834 AC-CGUCAUAUUAAUUAUUUAAUU-AGCCCUCUCGGGCUUCCAAAAAUUGCCGUAGUGGACGGUAUUUCACGUCCCCAUGGCGGGG-UAUUGGUUAAAGUUUUCAACUAGCAAUAACCGC ((-(....................-(((((....)))))........(((((((.(.(((((........)))))).)))))))))-)...(((((..(((.......)))..))))).. ( -33.40) >DroSim_CAF1 16969 118 + 1 AC-CGCCAUAUUAAUUAUUUAAUU-AGCCCUCUCGGGCUUCCAAAAAUUGCCGUAGUGGACGGUAUUUCACGUCCCCAUGGCGGGGCUAUUGGUUUAAGUUUUCAACUAGCAAUAAACGC .(-((((((...............-(((((....)))))................(.(((((........))))).)))))))).((((((((.........)))).))))......... ( -34.50) >DroWil_CAF1 13311 118 + 1 UU-UGUCAAAUUUAUUAUAUAUUUAAGCCCUCUCGGGCUUCCAAAAAUUGCCUUAGCGGACGGUAUUUCACGUCCCCUGGGCGGGG-UAUUGGUUAAAGUUUUCAACUAGCAAUAUUCGC ..-.....................((((((....))))))........(((((.((.(((((........))))).)))))))(((-(((((.(...(((.....)))).)))))))).. ( -31.50) >DroYak_CAF1 16212 117 + 1 UC-UUUUAAAUAAAUUGUUUAAUU-AGCCCUCUCGGGCUUCCAAAAAUUGCCGUAGUGGACGGUAUUUCACGUCCCCAUGGCGGGG-UAUUGGUUAAAGUUUUCAACUAGCAAUAACCGC ..-..........((((((.....-(((((....))))).((((...(((((((.(.(((((........)))))).)))))))..-..))))...............))))))...... ( -31.50) >DroMoj_CAF1 14958 118 + 1 CUCCUUUUCAUUUAUUAAAUUAUG-AGCCCUCUCGGGCUUCCAAAAAUUGCCGUAGUGGACGGUAUUUCACGUCCCCAUGGCGGGG-UAUUGGUUAAAGUUUUCAACUAGCAAUAAUCGC ((((...................(-(((((....)))))).........(((((.(.(((((........)))))).)))))))))-....(((((..(((.......)))..))))).. ( -32.90) >DroPer_CAF1 9220 117 + 1 GU-UUUCAUAUGUAUUGGAUAAUU-AGCCCUCUCGGGCUUGCAAAAAUUGCCGUAGUGGACGGUAUUUCACGUCCCCAUGGCGGGG-UAUUGGUUAAAGUUUUCAACUAGCAAUAACCGC ..-.((((.......)))).....-(((((....))))).((.....(((((((.(.(((((........)))))).)))))))..-....(((((..(((.......)))..))))))) ( -31.80) >consensus AC_CGUCAUAUUAAUUAUAUAAUU_AGCCCUCUCGGGCUUCCAAAAAUUGCCGUAGUGGACGGUAUUUCACGUCCCCAUGGCGGGG_UAUUGGUUAAAGUUUUCAACUAGCAAUAACCGC .........................(((((....)))))........(((((((.(.(((((........)))))).)))))))((.(((((.(...(((.....)))).))))).)).. (-28.69 = -28.58 + -0.11)
Location | 21,202,607 – 21,202,724 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.32 |
Mean single sequence MFE | -34.85 |
Consensus MFE | -28.27 |
Energy contribution | -28.38 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.66 |
Structure conservation index | 0.81 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21202607 117 - 22407834 GCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGGCU-AAUUAAAUAAUUAAUAUGACG-GU ((.(((((...((((((..........((((..-....(((.((((((((........))))).))).))).....)))).(((((....)))))-.......))))))..))))).-)) ( -37.10) >DroSim_CAF1 16969 118 - 1 GCGUUUAUUGCUAGUUGAAAACUUAAACCAAUAGCCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGGCU-AAUUAAAUAAUUAAUAUGGCG-GU ......((((((((((((.........((((.......(((.((((((((........))))).))).))).....)))).(((((....)))))-..........))))).)))))-)) ( -36.20) >DroWil_CAF1 13311 118 - 1 GCGAAUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCCAGGGGACGUGAAAUACCGUCCGCUAAGGCAAUUUUUGGAAGCCCGAGAGGGCUUAAAUAUAUAAUAAAUUUGACA-AA ((((...))))..((..((........((((..-....(((.((.(((((........))))).))..))).....))))((((((....))))))..............))..)).-.. ( -35.10) >DroYak_CAF1 16212 117 - 1 GCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGGCU-AAUUAAACAAUUUAUUUAAAA-GA (.((.(((((...(((((.....))))))))))-.)))(((.((((((((........))))).))).)))..(((((((((((((....)))))-((((....))))..)))))))-). ( -32.90) >DroMoj_CAF1 14958 118 - 1 GCGAUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGGCU-CAUAAUUUAAUAAAUGAAAAGGAG .((((((....))))))....((((..((((..-....(((.((((((((........))))).))).))).....)))).(((((....)))))-.................))))... ( -32.90) >DroPer_CAF1 9220 117 - 1 GCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA-CCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGCAAGCCCGAGAGGGCU-AAUUAUCCAAUACAUAUGAAA-AC ((((.(((((...(((((.....))))))))))-.)).(((.((((((((........))))).))).))).......)).(((((....)))))-.....................-.. ( -34.90) >consensus GCGGUUAUUGCUAGUUGAAAACUUUAACCAAUA_CCCCGCCAUGGGGACGUGAAAUACCGUCCACUACGGCAAUUUUUGGAAGCCCGAGAGGGCU_AAUUAAAUAAUAAAUAUGAAA_AA (((.....)))..((((..........((((.......(((.((((((((........))))).))).))).....)))).(((((....)))))........))))............. (-28.27 = -28.38 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:30 2006