| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,190,600 – 21,190,703 |
| Length | 103 |
| Max. P | 0.652203 |
| Location | 21,190,600 – 21,190,703 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.57 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -13.95 |
| Energy contribution | -12.77 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21190600 103 + 22407834 AAUGGGUAAAAGGAUAAUAAUAAGGGAGGUCUUCCACUUUCAAGGGUGA------UUUCUCC---AAGCAAAG-----GGGCGGCAUUUCCUUGAAGGCGCUGCUAGA-AUGUUUCCC-- ...(((.................((((((((.(((........))).))------)))).))---(((((...-----.((((((.((((...))))..))))))...-.))))))))-- ( -26.90) >DroPse_CAF1 30643 115 + 1 AAUUGCCUCAAG----AUGGGAAGGAAAGCGC-AAGCCCUUAAGGGUUGCAAAACCCUCUCUAGAAAGCAAAUGCGAGAGAUUGCAAUUCCUAGAAGGCGCUGCUAAAAAUGUUAGCAAU ....((((....----.((((((((...((..-..))))....(((((....)))))(((((.....((....)).)))))......))))))..))))..((((((.....)))))).. ( -34.40) >DroSec_CAF1 25442 105 + 1 AAUUGCUAUAAGGAUAAUAAUAAGGGAGGUCUUCCACUUCCAAGGGUGA------UUUCUCC---AAGCAAAG-----GGCCGGCAUUUUCUUGAAGGCGCUGCUAGA-AUGUUUGCCAC ...........((..((((....((((((((.(((........))).))------)))).))---.((((..(-----.(((..((......))..))).)))))...-.))))..)).. ( -25.90) >DroPer_CAF1 30500 115 + 1 AAUUGCCUCAAG----AUGGGAAGGAAAGCGC-AAGCCCUUAAGGGUUGCAAAACCCUCUCUAGGAAGCAAAUGCGAGAGAUUGCAAUUCCUAGAAGGCGCUGCUAAAAAUGUUAGCAAU ....((((....----.....((((...((..-..)))))).((((((....)))))).((((((((((((...(....).))))..))))))))))))..((((((.....)))))).. ( -38.80) >consensus AAUUGCCACAAG____AUAAGAAGGAAAGCCC_AAACCCUCAAGGGUGA______CCUCUCC___AAGCAAAG_____AGACGGCAAUUCCUAGAAGGCGCUGCUAAA_AUGUUAGCAAU ..((((................(((((((((...(((((....))))).........(((((..............))))).))).))))))....(((...)))..........)))). (-13.95 = -12.77 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:28 2006