Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,178,684 – 2,178,776 |
Length | 92 |
Max. P | 0.851650 |
Location | 2,178,684 – 2,178,776 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.76 |
Mean single sequence MFE | -32.07 |
Consensus MFE | -19.00 |
Energy contribution | -21.23 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.17 |
Structure conservation index | 0.59 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2178684 92 + 22407834 UGUCUAGU-UGCUUUCAGGAGCGACUCUUCUACACGUCCGCCCAGCACGGCAGUUUCU----UUUUGACUGCCGAUUCG------AUUCGAACAGGCGGCGAA .....(((-(((((....))))))))........((.(((((.....((((((((...----....)))))))).((((------...))))..))))))).. ( -34.60) >DroGri_CAF1 28467 78 + 1 UGUAUUUUUUUUGUUCCGCAG--------CAACACGUCCGCUCACCACGAAAGUUUCUUACGUUUUGACUCA-----------------AAACAUGCGAGUAA ..........((((......)--------))).......((((...((....)).......((((((...))-----------------))))....)))).. ( -10.80) >DroSec_CAF1 24750 92 + 1 UGUCUAGU-UGCUUUCAGGAGCGACUCUUCAACACGUCCGCCCAGCACGGCAGUUUCU----UUUUGACUGCCGAUUCG------AUUCGAACAGGCGGCGAA ((...(((-(((((....))))))))...))...((.(((((.....((((((((...----....)))))))).((((------...))))..))))))).. ( -35.20) >DroSim_CAF1 19123 92 + 1 UGUCUAGU-UGCUUUCAGGAGCGACUCUUCAACACGUCCGCCCAGCACGGCAGUUUCU----UUUUGACUGCCGAUUCG------AUUCGAACAGGCGGCGAA ((...(((-(((((....))))))))...))...((.(((((.....((((((((...----....)))))))).((((------...))))..))))))).. ( -35.20) >DroEre_CAF1 22667 102 + 1 UGUCUAGU-UGCUUUCAGGAGCGACACUUCAACACGUCCGCCCAGCACGGCAGUUUCUGGCGUUUUGACUGCCGAUUCGAUUUCGAUUCGAACAGGCGGCGAA ......((-(((((....))))))).........((.(((((.....((((((((...........)))))))).(((((.......)))))..))))))).. ( -37.20) >DroYak_CAF1 23442 102 + 1 UGUCUAGU-UGCUUUCAGGAGCGACUCGUCAACACGUCCGCCCAGCACGGCAGUUUCUGGCGUUUUGACUGCCGAUUCGAUUUCGAUUCGAACAGGCGGCGAG ((.(.(((-(((((....)))))))).).))...((.(((((.....((((((((...........)))))))).(((((.......)))))..))))))).. ( -39.40) >consensus UGUCUAGU_UGCUUUCAGGAGCGACUCUUCAACACGUCCGCCCAGCACGGCAGUUUCU____UUUUGACUGCCGAUUCG______AUUCGAACAGGCGGCGAA ..........((((....))))............((.(((((.....((((((((...........)))))))).((((.........))))..))))))).. (-19.00 = -21.23 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:01 2006