| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,183,884 – 21,183,985 |
| Length | 101 |
| Max. P | 0.771347 |
| Location | 21,183,884 – 21,183,985 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 69.43 |
| Mean single sequence MFE | -33.29 |
| Consensus MFE | -10.16 |
| Energy contribution | -10.63 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21183884 101 + 22407834 A---AAAAGUUUGUGGACGUGCGAGUACUCUACCUACUCCAU---ACCCCACAGAGUACUCUAGGUACUCCACUCCACAUCGCUCCAGUGCGGAUGGA----UGGACGGCA .---....(((((((((.(((((((((((((...........---.......)))))))))...)))))))))((((..((((......)))).))))----.)))).... ( -31.97) >DroPse_CAF1 24081 107 + 1 AACAAAGUGGAAGUGGAAGUACGUGUACUCGUCGUACUCCUCUCCACUCUACACUCUACACUAUGAACUCUGCGAUAUAGGAGUAUAGUGUGAGUGUG----UGUGUGGUA .(((.((((((.(.(((.(((((((....)).)))))))).))))))).(((((((.(((((((..(((((........)))))))))))))))))))----)))...... ( -41.10) >DroSec_CAF1 21088 108 + 1 AAAAAAAAGGUUUUGGACGUGCGAGUACUCUACCUACUCCAU---ACCCCAUAGAGUACUCUAGGUACUCCACUCCACAUCGCUCCAGUGCGGAUGGUUGGAUGUAUGGCA ........((...((((.((((((((((((((..........---......))))))))))...))))))))..))(((((...(((.......)))...)))))...... ( -30.29) >DroSim_CAF1 21403 106 + 1 AA--AAAAGGUUUUGGACGUGCGAGUACUCUACCUACUCCAU---ACCCCAUAGAGUACUCUAGGUACUCCACUCCACAUCGCUCCAGUGCGGAUGGUUGGAUGUAUGGCA ..--....((...((((.((((((((((((((..........---......))))))))))...))))))))..))(((((...(((.......)))...)))))...... ( -30.29) >DroYak_CAF1 22389 101 + 1 A---AAUUGGUAGUGGAAGUGCGUAUACUCUUACCACUCCAU---ACCAUACAGAGUACUCAAGGAACUCCACUCCACGUCGGAUCAGUGCGGAUGGA----UGGGUGGCA .---...(((((.((((.(((.(((......)))))))))))---))))....((((.(.....).))))(((((..((((.(.......).))))..----.)))))... ( -28.70) >DroPer_CAF1 23968 107 + 1 AACAAAGUGGAAGUGGAAGUACGUGUACUCGUCGUGCUCCUCUCCAGUCUACACUCUACACUAUGAACUCUGCGAUAUAGGAGUAUAGUGUGAGUGUG----UGUGUGGUA .(((...((((.(.(((.(((((((....)).)))))))).)))))...(((((((.(((((((..(((((........)))))))))))))))))))----)))...... ( -37.40) >consensus AA__AAAAGGUAGUGGAAGUGCGAGUACUCUACCUACUCCAU___ACCCCACAGAGUACUCUAGGAACUCCACUCCACAUCGCUCCAGUGCGGAUGGA____UGUAUGGCA ............(((((.((..(((((((((.....................))))))))).....)))))))...........(((.......))).............. (-10.16 = -10.63 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:27 2006