Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,169,337 – 21,169,457 |
Length | 120 |
Max. P | 0.540580 |
Location | 21,169,337 – 21,169,457 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -43.62 |
Consensus MFE | -27.12 |
Energy contribution | -27.52 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.35 |
Mean z-score | -1.56 |
Structure conservation index | 0.62 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21169337 120 + 22407834 GAUCUCGCCAGGCACAAAAUGCUAAGCUGAAAGCAGCUGCCCUGCUGAAGAAGAAGCCACUGGAGAAGAUCAACCCCAACUCCACACGAGGCAGUGAAAGUGGGAAGAGAAGAGCCAUCG ((((((.(((((((.....)))...(((.....((((......)))).......)))..)))).).)))))...((((.((...(((......)))..))))))................ ( -31.50) >DroVir_CAF1 8047 120 + 1 GAGCCCGACAGGCGCAGAGCGCCAAACUGAAAGCAGCUGCGCUGCUCAAGAAGAAGCCAUUGGAAAAGGUUAAUCCGAAUUCCACGCGCGGCACCGCAACGGGCAAACGGCGUGCCAUCG (((((((...(((((...))))).........((.(((((((.(((........)))...(((((..((.....))...))))).)))))))...))..)))))....((....)).)). ( -44.90) >DroPse_CAF1 6779 120 + 1 GUGCUCGACAAGCGGCGAGCGCAAAGCUGAGAGCGGCUGCCCUGCUGAAAAAGAAGCCGCUGGAGAAAGUCAAUCCAAACUCCACUCGCGGCUCAGAGACGGGCAAGCGGCGAGCCAUCG (((((((........)))))))...(((....((.(((((((..((((.......((((((((((..............)))))...)))))))))....)))).))).)).)))..... ( -46.35) >DroGri_CAF1 7214 120 + 1 GUGCACGUCAGGCGCAGAGCGCCAAAGUGAAAGCAGCCGCGCUGCUCAAGAAGAAGCCGCUGGAGAAGGUGAAUCCGAAUUCUACGCGCGGCACGGAGACGGGCAAACGGCGAGCCAUCG (.((.((((.(((((...))))).........((.(((((((.(((........))).(.(((((..((.....))...))))))))))))).((....)).))....)))).))).... ( -44.90) >DroMoj_CAF1 8285 120 + 1 GAGCGCGUCAGGCGCAGAGCGCCAAACUAAAAGCAGCAGCGCUGCUCAAGAAGAAGCCGCUGGAGAAGGUCAAUCCGAAUUCCACGCGCGGCACUGAGUCUGGCAAACGACGUGCCAUCG (.(((((((..((.....))((((.(((...((((((...)))))).........((((((((((..((.....))...)))))...)))))....))).))))....)))))))).... ( -47.70) >DroPer_CAF1 6829 120 + 1 GUGCUCGACAAGCGGCGAGCGCAAAGCUGAGAGCGGCUGCCCUGCUGAAAAAGAAGCCGCUGGAGAAAGUCAAUCCAAACUCCACUCGCGGCUCAGAGACGGGCAAGCGGCGAGCCAUCG (((((((........)))))))...(((....((.(((((((..((((.......((((((((((..............)))))...)))))))))....)))).))).)).)))..... ( -46.35) >consensus GAGCUCGACAGGCGCAGAGCGCCAAACUGAAAGCAGCUGCCCUGCUCAAGAAGAAGCCGCUGGAGAAGGUCAAUCCGAACUCCACGCGCGGCACAGAGACGGGCAAACGGCGAGCCAUCG ..(((((...((((.....))))........(((((.....))))).........((((((((((..((.....))...)))))...))))).......)))))................ (-27.12 = -27.52 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:22 2006