Locus 7625

Sequence ID 2L_DroMel_CAF1
Location 21,166,688 – 21,166,785
Length 97
Max. P 0.510904
window12255

overview

Window 5

Location 21,166,688 – 21,166,785
Length 97
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.28
Mean single sequence MFE -20.89
Consensus MFE -15.97
Energy contribution -16.28
Covariance contribution 0.31
Combinations/Pair 1.16
Mean z-score -1.43
Structure conservation index 0.76
SVM decision value -0.04
SVM RNA-class probability 0.510904
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21166688 97 + 22407834
GUGGA----GCCGCCAACAAGCGGCGCUUAUAACCACAAAAUGGCCACGGGAUAUAUUUGCAAAACAUUUAAAA--AAUUGCAAAUGCGGAGAACAAAAAAUC
((((.----(((((......)))))........(((.....)))))))......(((((((((...........--..)))))))))................ ( -23.02)
>DroSec_CAF1 4282 97 + 1
GUGGA----CCCGCCAACAAGCGGCGCUUAUAACCACAAAAUGGCCACGGAAUAUAUUUGCAAAACAUUUAAAA--AAUCGCAAAUGGGGAGAGCAAAAAAUC
((((.----.((((......)))).........(((.....)))))))......(((((((.............--....)))))))................ ( -16.63)
>DroSim_CAF1 4427 97 + 1
GUGGA----CCCGCCAACAAGCGGCGCUUAUAACCACAAAAUGGCCACGGAAUAUAUUUGCAAAACAUUUAAAA--AAUCGCAAAUGGGGAGAGCAAAAAAUC
((((.----.((((......)))).........(((.....)))))))......(((((((.............--....)))))))................ ( -16.63)
>DroEre_CAF1 5372 97 + 1
GUGGA----GCCGCUUAAAAGCGGCGCUUAUAACCACAAAAUGGCCACGGGAUAGGUUUGCAAAACAUCUACAA--AAUCGCAAAUGGGGGGAACAAAAAGUC
((((.----((((((....))))))........(((.....))))))).......((((((.............--....))))))................. ( -21.73)
>DroYak_CAF1 5304 97 + 1
GUGGA----GCCGCCUACAAGCGGCGCUUAUAACCACAAAAUGGCCACGGU--AUGUUUGCAAAACAUCUAAAAAAAAACGUAAGUGGGGAGAACAAAAAAUC
((((.----(((((......)))))........)))).......((((..(--((((((.................))))))).))))............... ( -23.43)
>DroAna_CAF1 3798 92 + 1
GUGGAAAUAGCGGCCCGCAAGCGGCGCUUAUAACCACAAAAUGGCCACGAG--AUGUUUGCAAAAUAAAUC--A--GCUAGC-AAUGGGCA----AAAAAGUG
((((....((((.(((....).)))))).....))))......(((.((..--.((((.((..........--.--)).)))-).))))).----........ ( -23.90)
>consensus
GUGGA____GCCGCCAACAAGCGGCGCUUAUAACCACAAAAUGGCCACGGGAUAUAUUUGCAAAACAUUUAAAA__AAUCGCAAAUGGGGAGAACAAAAAAUC
((((.....(((((......)))))........(((.....)))))))......(((((((...................)))))))................ (-15.97 = -16.28 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:21 2006