Locus 7622

Sequence ID 2L_DroMel_CAF1
Location 21,148,365 – 21,148,480
Length 115
Max. P 0.768648
window12248

overview

Window 8

Location 21,148,365 – 21,148,480
Length 115
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 93.19
Mean single sequence MFE -23.84
Consensus MFE -21.03
Energy contribution -20.96
Covariance contribution -0.06
Combinations/Pair 1.10
Mean z-score -1.66
Structure conservation index 0.88
SVM decision value 0.52
SVM RNA-class probability 0.768648
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21148365 115 + 22407834
CAUUCUUUCAUAUCCUGCUCGCAGUCACAUAGUUUCCUUCUGAUUUGUAACAUGUGUACAAACUGCCUAACUCGGCACUAACCCAGCUGCCUGGCUAGUCACUAAAUAUAUGUUA
..............(((....))).......................((((((((((.......(((......)))((((..((((....)))).))))......)))))))))) ( -19.40)
>DroSec_CAF1 6300 115 + 1
CAUUCUUUCAUAUGCUACACGCAGUCACAUAGUUUUCUUCUGAUUUGUAACAUCUGUACAAACUGCCUAACUAGGCACUAACCCAGCUGCCUGGCUAGUCACUAAAUAUAUGUUA
........((((((......(((((((...((....))..)))((((((.(....)))))))))))(((.(((((((((.....)).))))))).)))........))))))... ( -22.70)
>DroSim_CAF1 6469 115 + 1
CAUUCUUUCAUAUGCUACUCGCAGUCACAUAGUUUCCUUCUGAUUUGUAACAUGUGUACAAACUGCCUAACUAGGCACUAACCCAGCUGCCUGGCUAGUCACUAAAUAUAUGUUA
........((((((......((((((((((.(((..............)))))))).....)))))(((.(((((((((.....)).))))))).)))........))))))... ( -24.64)
>DroEre_CAF1 6644 115 + 1
CACUCUUUUAUAUCCGGCUUGCAGUCACAUAGUUUCCUCCUGAUUUGUAACGUGUGAACAAACUGCCUGGCUAGGCACUAACCCAGCUGCCUGGCUAGUCACUAAAUAUAUGUUA
........(((((..((...((((((((((.(((..............))))))))).....))))(((((((((((((.....)).)))))))))))...))..)))))..... ( -28.64)
>consensus
CAUUCUUUCAUAUCCUACUCGCAGUCACAUAGUUUCCUUCUGAUUUGUAACAUGUGUACAAACUGCCUAACUAGGCACUAACCCAGCUGCCUGGCUAGUCACUAAAUAUAUGUUA
........(((((.......((((((((((.(((..............)))))))).....)))))(((.(((((((((.....)).))))))).))).........)))))... (-21.03 = -20.96 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:16 2006