Locus 7621

Sequence ID	2L_DroMel_CAF1
Location	21,144,905 – 21,145,014
Length	109
Max. P	0.919038

overview

Window 6

Location	21,144,905 – 21,145,014
Length	109
Sequences	3
Columns	109
Reading direction	forward
Mean pairwise identity	97.55
Mean single sequence MFE	-30.50
Consensus MFE	-29.25
Energy contribution	-29.70
Covariance contribution	0.45
Combinations/Pair	1.04
Mean z-score	-2.22
Structure conservation index	0.96
SVM decision value	1.12
SVM RNA-class probability	0.919038
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21144905 109 + 22407834
AACAAGGCGCCCACGGUCUCCGGCAGCAUGAGCAAGAAGUUUAACACCAAAAAGGACUUUAAAAGGAAGCAAAUCGGCGGAGAUAGUGAUAGUCCGCAUGCCAUGAAGA
..((.((((..(((.(((((((.(.((....))..(((((((...........)))))))...............).))))))).)))...(....).)))).)).... ( -26.90)
>DroSec_CAF1 2856 109 + 1
AACAAGGCUCCCACAGUCUCCGGCAGCAUGAGCAAGAAGUUUAACACCAAAAAGGACUUCAAAAGGAAGCAAAUCGGCGGAGAUAGUGAGAGUCCGCAUGCCAUGAAGA
.....(((((.(((.(((((((.(.((....))..(((((((...........)))))))...............).))))))).))).)))))............... ( -32.30)
>DroSim_CAF1 2999 109 + 1
AACAAGGCUCCCACAGUCUCCGGCAGCAUGAGCAAGAAGUUUAACACCAAAAAGGACUUCAAAAGGAAGCAAAUCGGCGGAGAUAGUGAGAGUCCGCAUGCCAUGAAGA
.....(((((.(((.(((((((.(.((....))..(((((((...........)))))))...............).))))))).))).)))))............... ( -32.30)
>consensus
AACAAGGCUCCCACAGUCUCCGGCAGCAUGAGCAAGAAGUUUAACACCAAAAAGGACUUCAAAAGGAAGCAAAUCGGCGGAGAUAGUGAGAGUCCGCAUGCCAUGAAGA
.....(((((.(((.(((((((.(.((....))..(((((((...........)))))))...............).))))))).))).)))))............... (-29.25 = -29.70 +   0.45)

alignment

secondary structure

dotplot

Window 7

Location	21,144,905 – 21,145,014
Length	109
Sequences	3
Columns	109
Reading direction	reverse
Mean pairwise identity	97.55
Mean single sequence MFE	-29.93
Consensus MFE	-28.63
Energy contribution	-29.63
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-1.48
Structure conservation index	0.96
SVM decision value	-0.04
SVM RNA-class probability	0.512633
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21144905 109 - 22407834
UCUUCAUGGCAUGCGGACUAUCACUAUCUCCGCCGAUUUGCUUCCUUUUAAAGUCCUUUUUGGUGUUAAACUUCUUGCUCAUGCUGCCGGAGACCGUGGGCGCCUUGUU
....((.(((..(((((...........))))).............(((((...((.....))..)))))......(((((((.....(....))))))))))).)).. ( -23.40)
>DroSec_CAF1 2856 109 - 1
UCUUCAUGGCAUGCGGACUCUCACUAUCUCCGCCGAUUUGCUUCCUUUUGAAGUCCUUUUUGGUGUUAAACUUCUUGCUCAUGCUGCCGGAGACUGUGGGAGCCUUGUU
.......((((...((.(((((((..((((((((((...(((((.....))))).....)))))............((....))....)))))..))))))))).)))) ( -33.20)
>DroSim_CAF1 2999 109 - 1
UCUUCAUGGCAUGCGGACUCUCACUAUCUCCGCCGAUUUGCUUCCUUUUGAAGUCCUUUUUGGUGUUAAACUUCUUGCUCAUGCUGCCGGAGACUGUGGGAGCCUUGUU
.......((((...((.(((((((..((((((((((...(((((.....))))).....)))))............((....))....)))))..))))))))).)))) ( -33.20)
>consensus
UCUUCAUGGCAUGCGGACUCUCACUAUCUCCGCCGAUUUGCUUCCUUUUGAAGUCCUUUUUGGUGUUAAACUUCUUGCUCAUGCUGCCGGAGACUGUGGGAGCCUUGUU
.......((((...((.(((((((..((((((((((...(((((.....))))).....)))))............((....))....)))))..))))))))).)))) (-28.63 = -29.63 +   1.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:15 2006