Locus 7620

Sequence ID 2L_DroMel_CAF1
Location 21,128,866 – 21,128,956
Length 90
Max. P 0.622123
window12245

overview

Window 5

Location 21,128,866 – 21,128,956
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 77.71
Mean single sequence MFE -35.43
Consensus MFE -19.87
Energy contribution -18.99
Covariance contribution -0.88
Combinations/Pair 1.56
Mean z-score -1.68
Structure conservation index 0.56
SVM decision value 0.18
SVM RNA-class probability 0.622123
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21128866 90 - 22407834
GGAUCCACUCAAGGGAAUAGUUCCGGCAGUAGCUCCAGUUGUUCC------CGUUGUGGCUCCACCGGUGGCUGUGGCUACUGUCAUUUCACCGCC
(((.((((....(((((((..(..(((....)))..)..))))))------)...)))).)))..((((((..(((((....))))).)))))).. ( -37.30)
>DroVir_CAF1 3709 92 - 1
GGAUCCGCUCAAAAGCAUUGCUGCAGCUGUACCUCCGGCUGUGCCCGUUGCUAUUGCUGCUCCUCCAAUUGUGGUGCCACC---GAUUCCGGCUC-
(((..(((.(((.((((..((.(((((((......)))))))))....)))).)))..))..........(((....))).---)..))).....- ( -26.00)
>DroSec_CAF1 3770 90 - 1
GGAUCCACUCAAGGGAAUAGUUCCGGUAGUAGCUCCAGUUGUUCC------CGUUGUGGCUCCUCCGGUGGCUGUGGCUGCUGUCAUCUCACCGCC
(((.((((....(((((((..(..(((....)))..)..))))))------)...)))).)))..((((((..(((((....))))).)))))).. ( -34.00)
>DroSim_CAF1 3757 90 - 1
GGAUCCACUCAAGGGAAUAGUUCCGGUAGUAGCUCCAGUUGUUCC------CGUUGUGGCUCCUCCGGUGGCUGUGGCUGCUGUCAUCUCACCGCC
(((.((((....(((((((..(..(((....)))..)..))))))------)...)))).)))..((((((..(((((....))))).)))))).. ( -34.00)
>DroEre_CAF1 3726 96 - 1
GGAUCCACUCAAGGGAAUGGUUCCGGCAGUCGCCGCAGUUGUUCCUGCUCCCGUUGUAGCUCCUCCGGUGGCUGCGGCUGCUGUCAUCUCACCACC
(((.(((.((....)).))).)))((((((.((((((((..((...(((........)))......))..)))))))).))))))........... ( -38.10)
>DroYak_CAF1 3680 96 - 1
GGACCCACUCAAGGGAAUGGGUCCGGCAGUCGCGACAGUUGUUCCCGCUCCUGUUGUGGCUCCUCCGGUGGCUGCGGCUGCUGUCAUCUCACCACC
(((((((.((....)).)))))))((.(((((((((((..((....))..)))))))))))))...((((((.((....)).))))))........ ( -43.20)
>consensus
GGAUCCACUCAAGGGAAUAGUUCCGGCAGUAGCUCCAGUUGUUCC______CGUUGUGGCUCCUCCGGUGGCUGUGGCUGCUGUCAUCUCACCGCC
(((.((((.....(((((((((..(((....)))..)))))))))..........)))).)))...((((((.((....)).))))))........ (-19.87 = -18.99 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:13 2006