| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,127,908 – 21,128,028 |
| Length | 120 |
| Max. P | 0.716463 |
| Location | 21,127,908 – 21,128,028 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.36 |
| Mean single sequence MFE | -32.05 |
| Consensus MFE | -31.91 |
| Energy contribution | -31.35 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.65 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21127908 120 - 22407834 UCGUAGGCGCAAAAUUAUGGAGGACCAGCAGCGCAAGGAGCGGGAAGAGAGAGAGCGAAAGGAGCGUGAAGAGGCUGAUAAGCGUGAAAAGGCUCGUUUGGAGGCCGAGCGUAAGCAGCA ..((..((((....(((((.....((.((..(....)..)).))...........(....)...)))))...((((..((((((.(......).))))))..))))..))))..)).... ( -32.40) >DroSec_CAF1 2812 120 - 1 UCGUAGGCGCAAAAUUAUGGAGGACCAGCAGCGCAAGGAGCGGGAAGAAAGAGAGCGAAAGGAGCGUGAAGAGGCUGAUAAGCGUGAAAGGGCUCGUUUGGAGGCCGAGCGUAAGCAGCA ......((((..............((.((..(....)..)).))...........(....)..))))......((((....((((....((.(((.....))).))..))))...)))). ( -32.60) >DroSim_CAF1 2810 120 - 1 UCGUAGGCGCAAAAUUAUGGAGGACCAGCAGCGCAAGGAGCGGGAAGAAAGAGAGCGAAAGGAGCGUGAAGAGGCUGAUAAGCGUGAAAGGGCUCGUUUGGAGGCCGAGCGUAAGCAGCA ......((((..............((.((..(....)..)).))...........(....)..))))......((((....((((....((.(((.....))).))..))))...)))). ( -32.60) >DroYak_CAF1 2757 120 - 1 UCGUAGGCGCAAAAUCAUGGAGGAUCAGCAGCGUAAGGAGCGGGAAGAAAGAGAGCGAAAGGAGCGUGAAGAGGCUGAUAAGCGUGAAAAGGCUCGUUUGGAGGCUGAGCGUAAGCAGCA ..((..((((....(((((....((((((.((.......)).............((.......))........))))))...)))))..((.(((.....))).))..))))..)).... ( -30.60) >consensus UCGUAGGCGCAAAAUUAUGGAGGACCAGCAGCGCAAGGAGCGGGAAGAAAGAGAGCGAAAGGAGCGUGAAGAGGCUGAUAAGCGUGAAAAGGCUCGUUUGGAGGCCGAGCGUAAGCAGCA ..((..((((....(((((.....((.((..(....)..)).))...........(....)...)))))...((((..((((((.(......).))))))..))))..))))..)).... (-31.91 = -31.35 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:12 2006