Locus 7616

Sequence ID 2L_DroMel_CAF1
Location 21,104,274 – 21,104,364
Length 90
Max. P 0.500000
window12240

overview

Window 0

Location 21,104,274 – 21,104,364
Length 90
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 88.90
Mean single sequence MFE -24.52
Consensus MFE -22.16
Energy contribution -22.38
Covariance contribution 0.22
Combinations/Pair 1.08
Mean z-score -1.20
Structure conservation index 0.90
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21104274 90 + 22407834
U--------UUCCUUCUGCUGUUGCCAGGGAAAAUCAAUAUGGUUUAUGUAAUUCCUGCGAC---GACGCCAUCAUGCAGAUUUGCGUCAAGUCGGCGACG
.--------...........((((((((((((((((.....)))))......)))))..(((---(((((.(((.....)))..)))))..))))))))). ( -25.50)
>DroSec_CAF1 11526 90 + 1
U--------UUCCUUCAGCUGUUGCCAGGCAAAAUCAAUAUGGUUUAUGUAAUUCCUGCGAC---UACGCCAUCAUGCAGAUUUGCGUCAAGUCGGCGACG
.--------...........((((((..((((((((.....))))).))).........(((---(((((.(((.....)))..))))..)))))))))). ( -23.20)
>DroSim_CAF1 14036 90 + 1
U--------UUCCUUCAGCUGUUGCCAGGCAAAAUCAAUAUGGUUUAUGUAAUUCCUGCGAC---GACGCCAUCAUGCAGAUUUGCGUCAAGUCGGCGACG
.--------...........((((((..((((((((.....))))).))).........(((---(((((.(((.....)))..)))))..))))))))). ( -24.50)
>DroEre_CAF1 11260 98 + 1
UCCUUCUGCUUCCUUCUGCUGUUGCCAGGCAAAAUCAAUAUGGUUUAUGUAAUUCCUACGAC---GACGCCAUCAUGCAGAUUUGCGUCAAGUCGGCAACG
.......((........)).((((((..((((((((.....))))).))).........(((---(((((.(((.....)))..)))))..))))))))). ( -25.80)
>DroYak_CAF1 10541 90 + 1
U--------UUCCUUUGGCUGUUGUCAUGCAAAAUCAAUAUGGUUUAUGUAAUUCCUACGAC---GACGCCAUCAUGCAGAUUUGCGUCAAGUCGGCGACG
.--------......((((.((((((.....(((((.....)))))..(((.....))))))---)))))))...(((.((((((...)))))).)))... ( -22.80)
>DroAna_CAF1 2990 84 + 1
-----------------GCUGUUGCCAGGCAAAAUCAAUAUGGUUUAUGUAAUUCCUACGACUGCGACGCCAUCGUGCAGAUUUACGUCAAGUCGGCGACG
-----------------...((((((..((((((((.....))))).))).........((((..((((..(((.....)))...)))).)))))))))). ( -25.30)
>consensus
U________UUCCUUCAGCUGUUGCCAGGCAAAAUCAAUAUGGUUUAUGUAAUUCCUACGAC___GACGCCAUCAUGCAGAUUUGCGUCAAGUCGGCGACG
....................((((((..((((((((.....))))).))).........(((...(((((.(((.....)))..)))))..))))))))). (-22.16 = -22.38 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:08 2006