Locus 7615

Sequence ID 2L_DroMel_CAF1
Location 21,103,078 – 21,103,233
Length 155
Max. P 0.821961
window12238 window12239

overview

Window 8

Location 21,103,078 – 21,103,193
Length 115
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 95.91
Mean single sequence MFE -26.53
Consensus MFE -25.49
Energy contribution -25.93
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.87
Structure conservation index 0.96
SVM decision value 0.68
SVM RNA-class probability 0.821961
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21103078 115 - 22407834
GAAAUCAUGUGAUUGCUUCUUAGAUAACCAUUUUCAGAGGUUGUCACACAACUGGCAUGAUAUCAGGAAGUUGUCGCUUUUGAUGUACAUUUCUACAGCUCAUAAAUAAUACAAA
...((((.(((((.(((((...(((((((.........)))))))......((((.......))))))))).)))))...))))............................... ( -24.50)
>DroSec_CAF1 10341 112 - 1
GAAAUCAUGUGAUUGCUUCUUAGAUAACCAUUUUCAGAGGUUGUCUGACAACUGACAUGAUAUCAGGAAGUUGUCGCUUUUGAUGUACCUUUCUACAGCUCAUAAAUAAUA---A
...((((.(((((.(((((((((((((((.........))))))))))...((((.......))))))))).)))))...))))...........................---. ( -28.00)
>DroSim_CAF1 12850 112 - 1
GAAAUCAUGUGAUUGCUUCUUAGAUAACCAUUUUCAGAGGUUGUCUGACAACUGGCAUGAUAUCAGGAAGUUGUCGCUUUUGAUGUACAUUUCUACAGCUCAUAAAUAAUA---A
...((((.(((((.(((((((((((((((.........))))))))))...((((.......))))))))).)))))...))))...........................---. ( -27.10)
>consensus
GAAAUCAUGUGAUUGCUUCUUAGAUAACCAUUUUCAGAGGUUGUCUGACAACUGGCAUGAUAUCAGGAAGUUGUCGCUUUUGAUGUACAUUUCUACAGCUCAUAAAUAAUA___A
...((((.(((((.(((((((((((((((.........))))))))))...((((.......))))))))).)))))...))))............................... (-25.49 = -25.93 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 21,103,114 – 21,103,233
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 97.76
Mean single sequence MFE -27.70
Consensus MFE -26.59
Energy contribution -27.03
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.75
Structure conservation index 0.96
SVM decision value 0.41
SVM RNA-class probability 0.725174
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21103114 119 - 22407834
GAUGGCUAUAUAAAUCUAUCUUUUAUUUAAACUAUGAUAAGAAAUCAUGUGAUUGCUUCUUAGAUAACCAUUUUCAGAGGUUGUCACACAACUGGCAUGAUAUCAGGAAGUUGUCGCUU
(((((..........)))))(((((((........)))))))......(((((.(((((...(((((((.........)))))))......((((.......))))))))).))))).. ( -25.50)
>DroSec_CAF1 10374 119 - 1
GAUGGCUAUAUAAAUCUAUCUUUUAUUUGAACUAUGAUAAGAAAUCAUGUGAUUGCUUCUUAGAUAACCAUUUUCAGAGGUUGUCUGACAACUGACAUGAUAUCAGGAAGUUGUCGCUU
(((((..........)))))(((((((........)))))))......(((((.(((((((((((((((.........))))))))))...((((.......))))))))).))))).. ( -29.00)
>DroSim_CAF1 12883 119 - 1
GAUGGCUAUAUAAAUCUAUCUUUUAUUUGAACUAUGAUAAGAAAUCAUGUGAUUGCUUCUUAGAUAACCAUUUUCAGAGGUUGUCUGACAACUGGCAUGAUAUCAGGAAGUUGUCGCUU
((..(((...............(((((........)))))((.(((((((.((((....((((((((((.........))))))))))))).).))))))).))....)))..)).... ( -28.60)
>consensus
GAUGGCUAUAUAAAUCUAUCUUUUAUUUGAACUAUGAUAAGAAAUCAUGUGAUUGCUUCUUAGAUAACCAUUUUCAGAGGUUGUCUGACAACUGGCAUGAUAUCAGGAAGUUGUCGCUU
((..(((...............(((((........)))))((.(((((((.((((....((((((((((.........))))))))))))).).))))))).))....)))..)).... (-26.59 = -27.03 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:08 2006