| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,102,298 – 21,102,388 |
| Length | 90 |
| Max. P | 0.575136 |
| Location | 21,102,298 – 21,102,388 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 80.03 |
| Mean single sequence MFE | -30.09 |
| Consensus MFE | -16.99 |
| Energy contribution | -16.85 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21102298 90 + 22407834 UACGACAGUGCCACUCCGGCGCUGGCACAGCAAAUGAAUUUGGCCCGAAGAGCCUGCUGGAGGAUCAAAUCCUACAGCUCGGAAUCCCUC ..((((((((((.....)))))))((.(((((.........(((.......)))))))).(((((...)))))...)))))......... ( -27.80) >DroSec_CAF1 9518 90 + 1 UACGACAGUGCCACUCCGGCGCUGCAACAACAGAUGAAUUUGGCCCGAAGAGCUUGCUGGAGGAUCAAAUCCUCCAGCUCGGAAUCCCUC ...(.(((((((.....)))))))).....((((....))))..((((.......((((((((((...))))))))))))))........ ( -33.21) >DroEre_CAF1 9352 90 + 1 UACGACAGUGCCACUCCGGCGCUGCAACGGGAAAUGAAUUUGGCCCGAAGAGCCUGCUGGAGGAUCAAUUCCUUCAGCUCGGAGUACCUC ((((.(((((((.....))))))))..((((..(......)..)))).....((.(((((((((.....)))))))))..)).))).... ( -35.90) >DroYak_CAF1 8368 90 + 1 UACGACAGUGCCACUCCGGCGCUGCAACAGCAAAUGAAUUUGGCCCGAAGAGCCUGCUGGAGGAUCAAAUCCUCCAGCUCGGAAUCCCUC ..((((((((((.....))))))).................(((.......))).((((((((((...)))))))))))))......... ( -33.50) >DroAna_CAF1 900 78 + 1 UACGACAGUGCCACGCCGGCACUGGAACAGCAAAUGAAUCUGGCCAGGCGAGCCUGCUGGAGAAGCGG---------CAAGGA---CCUC .....(((((((.....))))))).....((.......((..((.(((....)))))..))......)---------).....---.... ( -26.92) >DroPer_CAF1 25 81 + 1 UAUGACAGUGCCACGCCAGCACUGCAACAGCAAAUGAAUCUGGCCAGACGCGCCUGCUGGAGCAGCAGA---------AGGGAAGGUCCC ...(((..(.((..(((((((.(((....)))..))...))))).........((((((...)))))).---------.)).)..))).. ( -23.20) >consensus UACGACAGUGCCACUCCGGCGCUGCAACAGCAAAUGAAUUUGGCCCGAAGAGCCUGCUGGAGGAUCAAAUCCU_CAGCUCGGAAUCCCUC .....(((((((.....)))))))...(((((.........(((.......)))))))).....................((....)).. (-16.99 = -16.85 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:06 2006