Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,100,263 – 21,100,374 |
Length | 111 |
Max. P | 0.868005 |
Location | 21,100,263 – 21,100,374 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.55 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -16.95 |
Energy contribution | -18.51 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.16 |
Mean z-score | -1.78 |
Structure conservation index | 0.71 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21100263 111 - 22407834 U-AAAGGUCGAACGU-UAUUCAAAUAGAACUAUACUAUAU--UUUUGAAAAUAACCAAUUGGGAAUAUAUACUAAAUAUUAUACGCAUAUGCC-UUAUGUACAUUUUGGCCAGCAG .-...(((((((...-(((((..((((.......))))..--............((....))))))).................(((((....-.)))))....)))))))..... ( -16.00) >DroPse_CAF1 30477 113 - 1 UCAAAGGUCAAACGAAUAUUUGUAUGUAAGUCUAGUAUAUAUUCAUGAAUAUAACCAAUUGGGCAGCAAUG-UGAAUAUAA--UGGAUAUGGCAUGAUAUAUAUUUUGGCCAGGGA .....(((((((...((((...(((((..(((((...(((((((..........((....))(((....))-)))))))).--)))))...)))))..))))..)))))))..... ( -27.70) >DroPer_CAF1 30385 113 - 1 UCAAAGGUCAAACGAAUAUUUGUAUGUAAGUCUAGUAUAUAUUCAUGAAUAUAACCAAUUGGGCAGCAAUG-UGAAUAUAA--UGGAUAUGGCAUGAUAUAUAUUUUGGCCAGGGA .....(((((((...((((...(((((..(((((...(((((((..........((....))(((....))-)))))))).--)))))...)))))..))))..)))))))..... ( -27.70) >consensus UCAAAGGUCAAACGAAUAUUUGUAUGUAAGUCUAGUAUAUAUUCAUGAAUAUAACCAAUUGGGCAGCAAUG_UGAAUAUAA__UGGAUAUGGCAUGAUAUAUAUUUUGGCCAGGGA .....(((((((...((((...(((((..(((((...((((((((.........((....))..........))))))))...)))))...)))))..))))..)))))))..... (-16.95 = -18.51 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:05 2006