Locus 7611

Sequence ID 2L_DroMel_CAF1
Location 21,089,337 – 21,089,457
Length 120
Max. P 0.668086
window12233

overview

Window 3

Location 21,089,337 – 21,089,457
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.67
Mean single sequence MFE -40.22
Consensus MFE -26.00
Energy contribution -24.87
Covariance contribution -1.13
Combinations/Pair 1.48
Mean z-score -1.44
Structure conservation index 0.65
SVM decision value 0.28
SVM RNA-class probability 0.668086
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21089337 120 - 22407834
ACCUUAUGGAUCUCUACAAAGGUGGCGAUACAGCCUGCGCCUUUGUCACCGCUAAGGGGAAAGCUGGUGAACAGGUCAAAUGGUUUGUGGUUAACACGAGCACGGGUGAAAAGAUUGAUG
....(((.(((((...((((((((((......)))...)))))))((((((((........))).))))).....(((..(((((((((.....))))))).))..)))..))))).))) ( -38.70)
>DroPse_CAF1 15111 120 - 1
ACCUAUUGAAUCUGUACCGGGGCGGCGACACCGCCUGCGCCUUUGUGACAGUCAAGCGGAAGAGUGGCAAGCAGAUCGACUGGUUUGUGGUCAACACAAGCACGGGAGAUAAAAUUGCGG
.((..((((..((((((..((((((((....))))...))))..)).))))))))..)).......((((....(((..((((((((((.....))))))).)))..)))....)))).. ( -43.60)
>DroEre_CAF1 12324 120 - 1
ACCUUAUGAAUCUGUACAAAAGUGGCGACACAGCCUGCGCCUUUGUUACCGCAAAGGGGAAGGCAGGCGAACAGGUCAACUGGUUUGUGGUUAACACGAGCACGGGCGAAAAGAUCGAUG
......(((.(((((.(....(((....))).((((((.(((((((....))))))).....))))))).)))))))).((((((((((.....))))))).))).(((.....)))... ( -42.40)
>DroYak_CAF1 12094 120 - 1
ACCUUAUGAAUCUGUACAAAGGAGGCGACACAGCCUGCGCCUUUGUCACCGCGAAGGGGAAGGGUAGCGAACAGGUUAACUGGUUUGUGAUUAAUACGAGCACGGGCGAAAAGAUCGAUG
........(((((((.(...(.((((......)))).)((((((.((.((.....))))))))))...).)))))))..((((((((((.....))))))).))).(((.....)))... ( -32.70)
>DroMoj_CAF1 14897 120 - 1
AUCUGCUGAAUCUGUACAAGGAAGGCGACACCGCGUGCGCCUUUGUGACGGCCAAGCGAAAGAGCGGCGAGCAGGUUUUGUGGUAUGUGGUCAACACAAACACAGGAGCCGUCAUUGACA
.((((((.....(((...(.(((((((.(((...)))))))))).).)))(((...(....)...))).))))))(((((((...((((.....))))..)))))))...(((...))). ( -40.30)
>DroPer_CAF1 15204 120 - 1
ACCUAUUGAAUCUGUACCGGGGCGGCGACACCGCCUGCGCCUUUGUGACAGUCAAGCGGAAGAGUGGCAAGCAGAUCGACUGGUUUGUGGUCAACACAAACACGGGAGAUAAAAUUGCGG
.((..((((..((((((..((((((((....))))...))))..)).))))))))..)).......((((....(((..((((((((((.....))))))).)))..)))....)))).. ( -43.60)
>consensus
ACCUUAUGAAUCUGUACAAAGGAGGCGACACAGCCUGCGCCUUUGUGACCGCCAAGCGGAAGAGUGGCGAACAGGUCAACUGGUUUGUGGUCAACACAAGCACGGGAGAAAAGAUUGAUG
.(((..((.(((((((((((((((((......)))...))))))))....((...((......)).))..))))))))....(((((((.....)))))))..))).............. (-26.00 = -24.87 +  -1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:02 2006