Locus 7610

Sequence ID 2L_DroMel_CAF1
Location 21,088,967 – 21,089,087
Length 120
Max. P 0.882752
window12232

overview

Window 2

Location 21,088,967 – 21,089,087
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.89
Mean single sequence MFE -43.05
Consensus MFE -24.78
Energy contribution -24.78
Covariance contribution 0.00
Combinations/Pair 1.33
Mean z-score -1.86
Structure conservation index 0.58
SVM decision value 0.92
SVM RNA-class probability 0.882752
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21088967 120 - 22407834
GAGCGCCAAGCAACAUACUAUUACCUGUGUGAAGAUGAGUCCCUGCGAAAUGGUGGCAGCAACCGCCGAUUCCGAGGGGCAGAUCUUUGUGUGGCGGGACUUCGAGAAAAAAGACUCGAU
...(((((.(((.(((((........)))))(((((..(((((((.(((.((((((......)))))).)))).))))))..)))))))).))))).....(((((........))))). ( -46.10)
>DroPse_CAF1 14789 120 - 1
GAACGCCAACCAGAACCCCAUUAGGUGUGUACGUAUGAGUCCCAGCGAGGAGGUGGUAGCCACGGCCGACUCAGUGGGACGAAUUUUUGUCUGGCGGCAGUUUGACAAGCAAGAAACCAU
(((((((..((((((((......)))............((((((..(((..(((.((....)).)))..)))..)))))).........))))).))).))))................. ( -38.40)
>DroEre_CAF1 11945 120 - 1
GAGCGCCAAGCAACACACUAUUACCUGUGUGAAGAUGAGUCCCUGCGAAAUGGUGGCUGCAACCGCCGAUUCCGAGGGGCAGAUCUUUGUGUGGCGCGAUUUUGAGAAGCAGGAUACGAU
..((((((.(((.(((((........)))))(((((..(((((((.(((.((((((......)))))).)))).))))))..)))))))).)))))).((((((.....))))))..... ( -48.60)
>DroYak_CAF1 11717 120 - 1
GAGCGCCAAGCACCAUACUAUUACCUGUGUGAAAAUGAGUCCCUGCGAAAUGGUGGCAGCAACCGCCGAUUCCGAGGGGCGGAUCUACGUUUGGCGCAAUUUUGAACAACAAAGUUCGAU
..(((((((((..(((((........))))).......(((((((.(((.((((((......)))))).)))).))))))........)))))))))....((((((......)))))). ( -48.60)
>DroAna_CAF1 13057 120 - 1
GAGCGCCAACCAGAACCUGAUCACCUGUGUGCGAAUGAGUGCCUGCGAGAAGGUGGCCGCCACUGGCGACUCUUCUGGUCAGAUCUUCGUGUGGCGCGAGUUCGAGAACCAAAAGACGAU
..((((((....(((.((((((...((((..(......)..)..)))(((((((.((((....)))).)).)))))))))))...)))...))))))(.(((....)))).......... ( -38.20)
>DroPer_CAF1 14882 120 - 1
GAACGCCAACCAGAACCCCAUUAGGUGUGUACGUAUAAGUCCCAGCGAGGAGGUGGUAGCCACGGCCGACUCAGUGGGACGAAUUUUUGUCUGGCGGCAGUUUGACAAGCAAGAAACCAU
(((((((..((((((((......)))............((((((..(((..(((.((....)).)))..)))..)))))).........))))).))).))))................. ( -38.40)
>consensus
GAGCGCCAACCAGAACACUAUUACCUGUGUGAAAAUGAGUCCCUGCGAAAAGGUGGCAGCAACCGCCGACUCCGAGGGGCAGAUCUUUGUGUGGCGCGAGUUUGAGAAGCAAGAAACGAU
...(((((..(((.......(((.((......)).)))((((((..(((..(((((......)))))..)))..))))))......)))..)))))........................ (-24.78 = -24.78 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:01 2006