| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,176,173 – 2,176,276 |
| Length | 103 |
| Max. P | 0.593686 |
| Location | 2,176,173 – 2,176,276 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.79 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -4.06 |
| Energy contribution | -4.06 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.19 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2176173 103 - 22407834 CGCCAAUAAAUUUCAUUAUGUAUAAAACAAACACAUGCACUGUUUGGGUCAAC-UAAAUAGCUCCCAAGGAAAAGAAUGAUUU---ACUGGU--------GGUGAAAAUUUCAC-----U (((((.((((..(((((.(((((...........)))))((((((((.....)-)))))))..............))))))))---).))))--------)((((.....))))-----. ( -21.10) >DroSec_CAF1 22183 108 - 1 GGCCAAUAAAUUUCAUUAUGUGUAAAAAAAACACAUGCACUGUUUGGUUCAGC-CAAAUAGCUCUCAAGAAAAGAAAUGCUUU---AUUGGU--------GGGGAACAUUUCAAGAGUAU .(((((((((((((..(((((((.......)))))))..((((((((.....)-)))))))............)))))...))---))))))--------.................... ( -25.80) >DroSim_CAF1 16549 108 - 1 CGCCAAUAAAUUUCAUUAUGUAUAAAACAAACACAUGCACUGUUUGGGUCAGC-CAAAUAGCUCUCAAGAAAAGAAAUGCUUU---AUUGGU--------GGGGAACAUUUCAAGAGUAU ((((((((((((((....(((((...........)))))((((((((.....)-)))))))............)))))...))---))))))--------)................... ( -22.30) >DroEre_CAF1 20058 119 - 1 CGCCAAUAAAUUUCAAUAUGUAUAAAACAAACACUCAUACUGUUUGGGACACA-AAAAUAGAUCACGGGAAAAGGAAUACUUCUUUAAAUGUUAAGAAAUGGAAAAAAUGUUAAGGUGAU ((((.......................((((((.......)))))).((((..-....((..(((((...((((((....))))))...)))...))..)).......))))..)))).. ( -13.62) >DroYak_CAF1 20841 113 - 1 CGCCAAUAAAUUUCAUUAUGUAUAAAACAAACACUCGCACUGUUUGCGACAAAAAAAAUAGCUCCCGGGAAAAGGAAUACUUCCUUAUCAGU-------GGGAACAAAUUUAAAGGUGAU ((((..(((((((.....................(((((.....)))))...........(.(((((.((.(((((.....))))).))..)-------)))).))))))))..)))).. ( -26.30) >consensus CGCCAAUAAAUUUCAUUAUGUAUAAAACAAACACAUGCACUGUUUGGGUCAAC_AAAAUAGCUCCCAAGAAAAGGAAUGCUUU___AUUGGU________GGAGAAAAUUUCAAGAGGAU .........(((((.............((((((.......))))))................((....))...))))).......................................... ( -4.06 = -4.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:59 2006