Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,084,671 – 21,084,770 |
Length | 99 |
Max. P | 0.966236 |
Location | 21,084,671 – 21,084,770 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 87.97 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -25.58 |
Energy contribution | -25.38 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -2.04 |
Structure conservation index | 0.84 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21084671 99 + 22407834 AAAGGAAAAACAUUUCGGGCGGUGCAGUGUGCAUUGCAAAGGCAUUGCAGAACUCUAAGAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGG ....((((....))))..((((.(.((((((((.(((....))).)))((....))......))).)).).)))).((((.(((((....))))))))) ( -32.70) >DroSec_CAF1 7406 99 + 1 AAAGGAACAACAUCUCGGGCGGUGCAGUGUGCAGUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCAACACCCGCAUCCGGAAACGGAUUGGG ..((((....((((......))))..(((((((((((....)))))))((....))....))))...)))).....((((.(((((....))))))))) ( -32.00) >DroSim_CAF1 7496 99 + 1 AAAGGAACAACAUCUCGGGCGGUGCAGUGUGCAGUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGG ..................((((.(.((((((((((((....))))))(((....)))....)))).)).).)))).((((.(((((....))))))))) ( -34.80) >DroEre_CAF1 7514 97 + 1 -AAUAAACAACAUUUCGAACGGUGCAGUGUGCA-GGCAAAAGCAUUGUAGAGUUCCAAAAGCACUUCUCCUUCGCACCCGCAUCCGGAAACGGAUUGGG -...........(((.((((..((((((((...-.......))))))))..)))).))).((...........)).((((.(((((....))))))))) ( -28.20) >DroYak_CAF1 7437 98 + 1 -AAUAAACAACAUUUCGAACGGUGCAGUGUGCAAGGCAAAGACAUUGUAGAACUCCACAGACACUUCUCCUCCGCACCCGUAUCCGGAAACGGAUUGGG -..................((((((.....)))(((..(((...((((.(....).))))...)))..))))))..((((.(((((....))))))))) ( -24.30) >consensus AAAGGAACAACAUUUCGGGCGGUGCAGUGUGCAGUGCAAAGGCAUUGUAGAACUCUAAAAACACAUCUCCUCCGCACCCGCAUCCGGAAACGGAUUGGG ..............((..(((((((..(((.....)))...))))))).)).........................((((.(((((....))))))))) (-25.58 = -25.38 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:59 2006