Locus 7607

Sequence ID 2L_DroMel_CAF1
Location 21,073,279 – 21,073,380
Length 101
Max. P 0.532611
window12228

overview

Window 8

Location 21,073,279 – 21,073,380
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 81.98
Mean single sequence MFE -18.50
Consensus MFE -11.73
Energy contribution -11.77
Covariance contribution 0.03
Combinations/Pair 1.32
Mean z-score -1.67
Structure conservation index 0.63
SVM decision value -0.00
SVM RNA-class probability 0.532611
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21073279 101 + 22407834
UCCUUUUGGAAAAUACUUUCUUUGGACAAUUCCGCACUUUGCUGGGGCAUAGCCUUUACAAAAAGUUCAAUUUCCCUAAUGAUUUCUUCUUCCUCCUAAAA
((.((..(((((..(((((....(((....))).....(((..(((((...)))))..))))))))....)))))..)).))................... ( -14.40)
>DroSec_CAF1 44 101 + 1
UCCUUUUGGAAAAUACUUUCUUUGGCCAAUUCCGCACUUUGCUGGGGCAUAGCCUUUACAAAGAAUUCAAUUUCCCUAAUGAUUUCUUCUUCCUCCUAAAA
((.((..(((((.....(((((((.......((((.....)).))(((...)))....))))))).....)))))..)).))................... ( -17.00)
>DroSim_CAF1 44 101 + 1
UCCUUUUGGAAAAUACUUUCUUUGGCCAAUUCCGCACUUUGCUGGGGCAUAGCCUUUACAAAGAAUUCAAUUUCCCUAAUGAUUUCUUCUUCCUCCUAAAA
((.((..(((((.....(((((((.......((((.....)).))(((...)))....))))))).....)))))..)).))................... ( -17.00)
>DroEre_CAF1 10352 101 + 1
UCCUUUUGGAAAAUACUCUCUUUGGCCAGUUCCGCACUUUGCUGGGGCAUAGCCUUUACAAAGAGUUCCAUUUCCCUGAUGGAUUCCUCCUCCUCCUAAAA
.......((((......(((((((.(((((..........)))))(((...)))....))))))).((((((.....)))))))))).............. ( -25.90)
>DroYak_CAF1 10563 101 + 1
UCCUUUUGGAAAAUAAUUUCUUUCGCCAAUUCCGCACUUUGCUGGGGCAUAGCCUUUACAAAGAGUUCUAUUUCCCUAAUAAUUUCUUCUUCCUCCUAAGA
..(((..((((.............((.......)).(((((..(((((...)))))..)))))..........................))))....))). ( -15.10)
>DroAna_CAF1 4812 95 + 1
UCUUUUUGGAAAAUGGCCUCCUUUUCCAUUUCUGCACUGAGUAAGGGAAGAGCUUUAAUAAAUAGCUGUACUUCUUCAGCA------GCUUCACCCUGAAA
......(((((((.((...)))))))))(((((((.....)))((((..(((((..........((((........)))))------))))..)))))))) ( -21.60)
>consensus
UCCUUUUGGAAAAUACUUUCUUUGGCCAAUUCCGCACUUUGCUGGGGCAUAGCCUUUACAAAGAGUUCAAUUUCCCUAAUGAUUUCUUCUUCCUCCUAAAA
.......(((((.....(((((((.......((((.....)).))(((...)))....))))))).....))))).......................... (-11.73 = -11.77 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:58 2006