| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,054,376 – 21,054,482 |
| Length | 106 |
| Max. P | 0.746640 |
| Location | 21,054,376 – 21,054,482 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.89 |
| Mean single sequence MFE | -34.76 |
| Consensus MFE | -23.56 |
| Energy contribution | -23.84 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21054376 106 + 22407834 -CGUAAAUCAGUCGAGUGCACAAGGCCGCAUGCGGGUUAUGAACCUGCAACCGGCCCGGUC------------UCUAAGCCAACAAUUGCGACUUGCGGCUUGCACGGCUUGCGAAGAG -(((((..(.((((((((((...(((((..(((((((.....)))))))..))))).(((.------------.....))).............))).))))).)))..)))))..... ( -36.80) >DroSim_CAF1 8828 104 + 1 -CGUAAAUCAGUCGAAAGCACAAGGCCGCAUGCGGGUUAUGAACCUGCAACCGGCCCGGUC------------UCUAAGCCAACAA--ACGACUUGCGGCUUGCACGGCUUGCGAAGAG -(((((..((((((.........(((((..(((((((.....)))))))..))))).(((.------------.....))).....--.)))))(((.....))).)..)))))..... ( -36.00) >DroEre_CAF1 8666 86 + 1 CCGUAAAUCAGUCAAAAGCACAAGGCCGCAUGCGGGUUAUGAACCUGCAACCGGCCCGGUC------------UCUAAGGCAGCAA--ACGACUUGCGGC------------------- (((((....((((....((....(((((..(((((((.....)))))))..)))))..(((------------.....))).))..--..))))))))).------------------- ( -32.00) >DroYak_CAF1 9423 105 + 1 CCGUAAAUCAGUCGAAAGCACAAGGCCGCUUGCGGGUUAUGAACCUGCAACCAGCCCGGUC------------UCUAAGUCAACAA--ACGACUUGCGGCUUGCACGGCUUGCGAAGAG .(((((..(.(((....).)).(((((((.(((((((.....)))))))(((.....))).------------...(((((.....--..))))))))))))....)..)))))..... ( -35.20) >DroAna_CAF1 8567 109 + 1 CCGUAAAUCAGUCGAAAGCACAAGGCCGCAUGCGGGUUAUGAACCUGCAACCGGCUCUGUCUCCGUCUCUGGCUCUAAGCCAACUU-UACAAUUUACAGUUUACACGG---------AG ((((.....((.((..((.(((..((((..(((((((.....)))))))..))))..))))).)).)).((((.....))))....-.................))))---------.. ( -33.80) >consensus CCGUAAAUCAGUCGAAAGCACAAGGCCGCAUGCGGGUUAUGAACCUGCAACCGGCCCGGUC____________UCUAAGCCAACAA__ACGACUUGCGGCUUGCACGGCUUGCGAAGAG .(((((.((.(((....).))..(((((..(((((((.....)))))))..)))))..................................)).)))))..................... (-23.56 = -23.84 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:57 2006