Locus 7605

Sequence ID 2L_DroMel_CAF1
Location 21,050,447 – 21,050,546
Length 99
Max. P 0.711746
window12226

overview

Window 6

Location 21,050,447 – 21,050,546
Length 99
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 86.36
Mean single sequence MFE -31.53
Consensus MFE -25.36
Energy contribution -25.92
Covariance contribution 0.56
Combinations/Pair 1.21
Mean z-score -2.17
Structure conservation index 0.80
SVM decision value 0.38
SVM RNA-class probability 0.711746
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21050447 99 - 22407834
AAUUGAGGUGAACUGCUUGCCUCGCCCACUGCCGCCUUCAAUAGGUUUUCCAAGGCAGCAAAUUGCGGUCUAUUAACACGCAGAUGCCAAGUGGCAAAA--------
....((((..(.....)..))))......((((((........((....))..((((.....(((((((......)).))))).))))..))))))...-------- ( -30.30)
>DroSec_CAF1 4856 99 - 1
AAUUGAGGUGAGCUGCUCGCCUUGCCCACUGCCGCCUUCAAUAGGUUUUCCAAGGCAGCAAAUUGCGGUCUAUUAACACGCAGAUGCCAAGUGGCAAAA--------
....((((((((...))))))))......((((((........((....))..((((.....(((((((......)).))))).))))..))))))...-------- ( -31.80)
>DroSim_CAF1 4807 99 - 1
AAUUGAGGUGAGCUGCUCGCCUCGCCCACUGCCGCCUUCAAUAGGUUUUCCAAGGCAGCAAAUUGCGGUCUAUUAACACGCAGAUGCCAAGUGGCAAAA--------
....((((((((...))))))))......((((((........((....))..((((.....(((((((......)).))))).))))..))))))...-------- ( -34.20)
>DroEre_CAF1 4888 97 - 1
AAUUGAGGUGAGCUACUCGCCUCGCCCACUGCCGCC--CACUAGGCUUUCCAAGCCAGCAAAUUGCGGUCUAUUAACACGCAGAUGCCAAGUGGCAAAA--------
....((((((((...))))))))......((((((.--.....((((.....)))).(((..(((((((......)).))))).)))...))))))...-------- ( -34.70)
>DroYak_CAF1 5473 97 - 1
AGUUUAGGUGAACUACUCGCCUCGCCCACUGCCGUCUUCAAUAGGUUUUCCAAGGCAGCAAA--GCGGUCUAUUAACACGCAGAUGCCAAGUGGCAAAA--------
.....((((((.....)))))).......(((((.(((.....((....))..((((.....--(((((......)).)))...))))))))))))...-------- ( -25.20)
>DroAna_CAF1 4812 102 - 1
----GAAGUGCACUACCCCCAUAGCCCACUAACGCCCUCAAUGGGCUUU-CAAGGCGGCAAAUUGCGGUCUAUUAACACGCAGCUGCCAAGUGGCCAAAGUGAACAA
----...((.((((....((((.(((....((.((((.....)))))).-...)))((((..(((((((......)).))))).))))..))))....)))).)).. ( -33.00)
>consensus
AAUUGAGGUGAACUACUCGCCUCGCCCACUGCCGCCUUCAAUAGGUUUUCCAAGGCAGCAAAUUGCGGUCUAUUAACACGCAGAUGCCAAGUGGCAAAA________
....(((((((.....)))))))(((.(((...((((.....)))).......((((.....(((((((......)).))))).)))).))))))............ (-25.36 = -25.92 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:56 2006