Locus 7603

Sequence ID 2L_DroMel_CAF1
Location 21,024,850 – 21,024,944
Length 94
Max. P 0.747289
window12222 window12223

overview

Window 2

Location 21,024,850 – 21,024,944
Length 94
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 80.21
Mean single sequence MFE -24.50
Consensus MFE -11.78
Energy contribution -10.90
Covariance contribution -0.88
Combinations/Pair 1.19
Mean z-score -3.35
Structure conservation index 0.48
SVM decision value 0.14
SVM RNA-class probability 0.600945
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21024850 94 + 22407834
AUUAACCUCCGCAAAGGUUUCAAUUGCA-UUCCAGAGUAAACAAAUUUGUGGAAUCGAAAACAAUUG-GAAAUGAGUCUUUGU-AGGAGAGUAAAUA
....((((((((((((((((((((((((-(((((.((.........)).)))))).)....))))))-))).....)))))))-.)))).))..... ( -23.60)
>DroYak_CAF1 81010 94 + 1
AUUAACCUCCACAAAGGUUUCAAUUGCA-UUCAAGAGUAAACAAAUUUGUGGAAUCGAAAACAAUUG-AAAAUGUAUCUUUGU-AGGAGGGUAAAUA
.....(((((((((((((((((((((..-(((..((....(((....)))....)))))..))))))-)).....))))))))-.)))))....... ( -26.20)
>DroAna_CAF1 101449 92 + 1
AUCAACCUCCACAAAGGUUUGAAUUGCAGCUCGAAAGUAAACAUAUUUGUGGAGUGGCAAGCAGUUCUUAAAUGUUUAUUUUUGAGGAGA-----UA
.(((((((......))).)))).......(((((((((((((((..(((.(((.((.....)).))).))))))))))))))))))....-----.. ( -23.70)
>consensus
AUUAACCUCCACAAAGGUUUCAAUUGCA_UUCAAGAGUAAACAAAUUUGUGGAAUCGAAAACAAUUG_AAAAUGUAUCUUUGU_AGGAGAGUAAAUA
......((((((((((((((((((((...(((..((((......))))...))).......))))))..))))....))))))..))))........ (-11.78 = -10.90 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 21,024,850 – 21,024,944
Length 94
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 80.21
Mean single sequence MFE -18.67
Consensus MFE -10.75
Energy contribution -9.98
Covariance contribution -0.77
Combinations/Pair 1.19
Mean z-score -2.36
Structure conservation index 0.58
SVM decision value 0.47
SVM RNA-class probability 0.747289
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21024850 94 - 22407834
UAUUUACUCUCCU-ACAAAGACUCAUUUC-CAAUUGUUUUCGAUUCCACAAAUUUGUUUACUCUGGAA-UGCAAUUGAAACCUUUGCGGAGGUUAAU
...(((..((((.-.(((((.....((((-.((((((.....((((((...............)))))-))))))))))).))))).))))..))). ( -17.06)
>DroYak_CAF1 81010 94 - 1
UAUUUACCCUCCU-ACAAAGAUACAUUUU-CAAUUGUUUUCGAUUCCACAAAUUUGUUUACUCUUGAA-UGCAAUUGAAACCUUUGUGGAGGUUAAU
...(((.(((((.-((((((......(((-(((((((.(((((....(((....)))......)))))-.)))))))))).))))))))))).))). ( -25.80)
>DroAna_CAF1 101449 92 - 1
UA-----UCUCCUCAAAAAUAAACAUUUAAGAACUGCUUGCCACUCCACAAAUAUGUUUACUUUCGAGCUGCAAUUCAAACCUUUGUGGAGGUUGAU
.(-----(((((.((((..(((....))).(((..(((((.......(((....))).......))))).....))).....)))).)))))).... ( -13.14)
>consensus
UAUUUACUCUCCU_ACAAAGAAACAUUUA_CAAUUGUUUUCGAUUCCACAAAUUUGUUUACUCUCGAA_UGCAAUUGAAACCUUUGUGGAGGUUAAU
..............................(((((((......(((...................)))..))))))).((((((....))))))... (-10.75 =  -9.98 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:53 2006