Locus 7599

Sequence ID 2L_DroMel_CAF1
Location 21,018,782 – 21,018,922
Length 140
Max. P 0.834724
window12215 window12216

overview

Window 5

Location 21,018,782 – 21,018,900
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 90.96
Mean single sequence MFE -17.26
Consensus MFE -14.90
Energy contribution -14.35
Covariance contribution -0.55
Combinations/Pair 1.15
Mean z-score -2.31
Structure conservation index 0.86
SVM decision value 0.73
SVM RNA-class probability 0.834444
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21018782 118 - 22407834
AAUAAAACCCAGCAAUUUGUCAAACAAGUUGCUGCCCACGCAGAAAUGAAAUGAAAAAGAAUACAAACCCAACCAGCAAAAUGAAAACAAGAAUUUGUAAAUCUUCCAAAUUAGAAUC
.........((((((((((.....))))))))))..((..((....))...))...((((.((((((.........(.....)..........))))))..))))............. ( -15.51)
>DroSec_CAF1 64075 118 - 1
AAUAAAACCCAGCAAUUUGUCAAACAAGUUGCUGCCUACGCAGAAAUCAAAUGAAAAAGAAUACAAACACAAACAGCAAAAUGAAAACAAGAAUUUGUAAAUCUUCCAAAUUAGAAUC
.........((((((((((.....))))))))))............((.(((....((((.((((((.........(.....)..........))))))..))))....))).))... ( -15.71)
>DroEre_CAF1 69917 117 - 1
AAUAAAACCCAGCAAUUUGACAACCAAGUUGCUGCCCACGCAAAAAUCAAGUGAA-AGGAAUGCAAGCCCAAACAGCAAAAUAAAAACAUGAAUUUGUAAAUCUUUCAAAUUAGAAUG
.........((((((((((.....)))))))))).................((((-(((..((((((..((..................))..))))))..))))))).......... ( -20.57)
>consensus
AAUAAAACCCAGCAAUUUGUCAAACAAGUUGCUGCCCACGCAGAAAUCAAAUGAAAAAGAAUACAAACCCAAACAGCAAAAUGAAAACAAGAAUUUGUAAAUCUUCCAAAUUAGAAUC
.........((((((((((.....))))))))))............((.(((....((((.((((((..(....................)..))))))..))))....))).))... (-14.90 = -14.35 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 21,018,820 – 21,018,922
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 87.58
Mean single sequence MFE -19.93
Consensus MFE -15.27
Energy contribution -15.27
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.61
Structure conservation index 0.77
SVM decision value 0.73
SVM RNA-class probability 0.834724
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21018820 102 - 22407834
CAGCCCUCACGCUCUCGGCCCAAAUAAAACCCAGCAAUUUGUCAAACAAGUUGCUGCCCACGCAGAAAUGAAAUGAAAAAGAAUACAAACCCAACCAGCAAA
..........(((...((.............((((((((((.....))))))))))..((..((....))...))...............))....)))... ( -17.30)
>DroSec_CAF1 64113 102 - 1
CAGCCCUGAAGCUCUCGGCCCAAAUAAAACCCAGCAAUUUGUCAAACAAGUUGCUGCCUACGCAGAAAUCAAAUGAAAAAGAAUACAAACACAAACAGCAAA
..((.(((..((.....))............((((((((((.....))))))))))......)))...((....)).....................))... ( -16.40)
>DroEre_CAF1 69955 101 - 1
AAGCCCUGAAGCUCCGGGCUUAAAUAAAACCCAGCAAUUUGACAACCAAGUUGCUGCCCACGCAAAAAUCAAGUGAA-AGGAAUGCAAGCCCAAACAGCAAA
..........(((..((((((..........((((((((((.....))))))))))..(((...........)))..-........))))))....)))... ( -26.10)
>consensus
CAGCCCUGAAGCUCUCGGCCCAAAUAAAACCCAGCAAUUUGUCAAACAAGUUGCUGCCCACGCAGAAAUCAAAUGAAAAAGAAUACAAACCCAAACAGCAAA
..(((...........)))............((((((((((.....)))))))))).............................................. (-15.27 = -15.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:47 2006