| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,012,472 – 21,012,571 |
| Length | 99 |
| Max. P | 0.808915 |
| Location | 21,012,472 – 21,012,571 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.30 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -21.86 |
| Energy contribution | -22.62 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21012472 99 - 22407834 ----------UAACUAAUAUGAAUAGCUAAUAAAUCACAUUUGGACUGUGAUUUAUGUGACAGGUGCGUAUUGCGAUUUGAAAUUGGCAACAGUUUCCAUUCCGCAUCC----------- ----------.....((((((....(((.((((((((((.......))))))))))......))).))))))(((....(((((((....))))))).....)))....----------- ( -25.00) >DroPse_CAF1 136895 120 - 1 CUCCGACUCGCAACUAAUAUGAAUACCUAAUAAAUCACAUUUGGACGGUGAUUUAUGUGACAGGUGCGUAUUGCGAUUUGAAAUUGGCAACAGUUUCGGUUUCGGUUUCGGUUUCGUUUU ..((((..(.....(((((((..(((((.(((((((((.........))))))))).....))))))))))))(((.(((((((((....)))))))))..))))..))))......... ( -33.40) >DroSim_CAF1 59641 99 - 1 ----------UAACUAAUAUGAAUAGCUAAUAAAUCACAUUUGGACUGUGAUUUAUGUGACAGGUGCGUAUUGCGAUUUGAAAUUGGCAACAGUUUCCAUUUCGCAUCC----------- ----------.....((((((....(((.((((((((((.......))))))))))......))).))))))((((..((((((((....)))))).))..))))....----------- ( -28.00) >DroEre_CAF1 63553 99 - 1 ----------UAACUAAUAUGAAUAGGUAAUAAAUCACAUUUGGACUGUGAUUUAUGUGACAGGUGCGUAUUGCGAUUUGAAAUUGGCAACAGUUUCCAUUUCGUAUCC----------- ----------.....((((((.((..((.((((((((((.......))))))))))...))..)).))))))((((..((((((((....)))))).))..))))....----------- ( -28.60) >DroYak_CAF1 68715 99 - 1 ----------UAACUAAUAUGAAUAGGUAAUAAAUCACAUUUGGACUGUGAUUUAUGUGACAGGUGCGUAUUGCGAUUUGAAAUUGGCAACAGUUUCCAUUUUGUAUCC----------- ----------.....((((((.((..((.((((((((((.......))))))))))...))..)).))))))((((..((((((((....)))))).))..))))....----------- ( -26.50) >DroAna_CAF1 89079 97 - 1 ------UUGGUAACUAAUAUGAAUAACUAAUAAAUCACAUUCGGACGGUGAUUUAUGUGACAGGUGCGUAUUGCGAUUUGAAAUUGGCAACAGUUUCCAUUUC----------------- ------........(((((((....(((.(((((((((.........)))))))))......))).)))))))......(((((((....)))))))......----------------- ( -20.10) >consensus __________UAACUAAUAUGAAUAGCUAAUAAAUCACAUUUGGACUGUGAUUUAUGUGACAGGUGCGUAUUGCGAUUUGAAAUUGGCAACAGUUUCCAUUUCGCAUCC___________ ...............((((((.((.....((((((((((.......)))))))))).......)).))))))((((...(((((((....)))))))....))))............... (-21.86 = -22.62 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:44 2006