| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,006,747 – 21,006,852 |
| Length | 105 |
| Max. P | 0.621068 |
| Location | 21,006,747 – 21,006,852 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.14 |
| Mean single sequence MFE | -17.70 |
| Consensus MFE | -12.54 |
| Energy contribution | -12.23 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21006747 105 - 22407834 UCUUAUAUAUGUAUGUAU--GUAUAUGAAUUGGCGGACAUAUAAAUGCAAAAAAAAAAAAAAGAAAUCAAAAAAGGAGGAUGCU-UCAUUUCAGUUGCAGUCUCCAAU .............(((((--.((((((..........)))))).))))).........................((((..(((.-.(......)..)))..))))... ( -17.90) >DroSec_CAF1 55642 101 - 1 UCCUAUAUAUGU----AU--GUAUAUGAAUUGGCGGACAUAUAAAUACCAAAAAAAAAAAAGGAAAACAAAAAAGGAGGAUGCU-UCAUUUCAGUUGCAGUCUCCAAU ((((((((((..----..--))))))...((((..............)))).........))))..........((((..(((.-.(......)..)))..))))... ( -17.64) >DroSim_CAF1 57475 103 - 1 UUCUAUAUAUGUAUGUAU--GUAUAUGAAUUGGCGGACAUAUAAAUAC--AAAAAAAAAAAGGAAAACAAAAAAGGAGGAUGCU-UCAUUUCAGUUGCAGUCUCCAAU ((((.........(((((--.((((((..........)))))).))))--).........))))..........((((..(((.-.(......)..)))..))))... ( -17.97) >DroYak_CAF1 66529 87 - 1 UCGUAUAUACAUAUUUAUGUGGAAAU------ACAGGAGUAUA----A--AA---------AAAAAUCAAUAUAGGAGGAUGCUUUUGUUUCAGUUGCAGUCUCCAAU ..........((((((.((((....)------))).)))))).----.--..---------.............((((..(((..(((...)))..)))..))))... ( -17.30) >consensus UCCUAUAUAUGUAUGUAU__GUAUAUGAAUUGGCGGACAUAUAAAUAC__AAAAAAAAAAAAGAAAACAAAAAAGGAGGAUGCU_UCAUUUCAGUUGCAGUCUCCAAU .....(((((((........................)))))))...............................((((..(((.............)))..))))... (-12.54 = -12.23 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:43 2006