Locus 7595

Sequence ID 2L_DroMel_CAF1
Location 21,005,634 – 21,005,730
Length 96
Max. P 0.786510
window12210

overview

Window 0

Location 21,005,634 – 21,005,730
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 94.83
Mean single sequence MFE -26.10
Consensus MFE -19.85
Energy contribution -20.05
Covariance contribution 0.20
Combinations/Pair 1.11
Mean z-score -2.27
Structure conservation index 0.76
SVM decision value 0.57
SVM RNA-class probability 0.786510
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21005634 96 + 22407834
UGCCCCUUGUCUGCCUGUUCGACUCCUACAUUUAACAUUUAACUCUUUUGUCGAACAUUUGACGAUGG--GGCACCCGAAAAAUAAGAUGAGCGUAAC
(((((((((((....((((((((..........................))))))))...))))).))--))))........................ ( -27.37)
>DroSec_CAF1 54550 98 + 1
UGCCCCUCGUCUGCCUGUUCGACUCCUACAUUUAGCAUUUAACUCUUUUGUCGAACAUUUGACGAUGGGGGGCACCCGAAAAAUAAGAAGAGCGUAAC
(((((((((((..(.((((((((..........................))))))))...)..)))))))))))........................ ( -29.37)
>DroSim_CAF1 56386 96 + 1
UGCCCCUCGUCUGCCUGUUCGGCUCCUACAUUUAACAUUUAAAUCUUUUGUCGAACAUUUGACGAUGG--GGCACCCGAAAAAUAAGAAGAGCGUAAC
(((((((((((....((((((((......(((((.....))))).....))))))))...))))).))--))))........................ ( -30.20)
>DroEre_CAF1 60121 96 + 1
UGCCCCUUGUCUGCUCGCUCGACUCCUACAUUUAACAUUUAACUCUUUUGUCGAACAUUUGACGAUGG--GGCACCCGAAAAAUAAGAAGAGCGUAAC
(((((((((((.......(((((..........................)))))......))))).))--))))........................ ( -21.59)
>DroYak_CAF1 65502 96 + 1
UGCCCCUUGUCUGCCUAUUCGACUCCUACAUUUAACAUUUAACUCUUUUGUCGAACAUUCGACGAUGG--GGCACCCGAAAAAUAAGAAGAGCGUAAC
(((((((((((......((((((..........................)))))).....))))).))--))))........................ ( -21.97)
>consensus
UGCCCCUUGUCUGCCUGUUCGACUCCUACAUUUAACAUUUAACUCUUUUGUCGAACAUUUGACGAUGG__GGCACCCGAAAAAUAAGAAGAGCGUAAC
(((((((((((....((((((((..........................))))))))...))))).))..))))........................ (-19.85 = -20.05 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:42 2006