Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,003,680 – 21,003,798 |
Length | 118 |
Max. P | 0.539100 |
Location | 21,003,680 – 21,003,798 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 87.63 |
Mean single sequence MFE | -31.24 |
Consensus MFE | -22.18 |
Energy contribution | -23.90 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.09 |
Mean z-score | -1.69 |
Structure conservation index | 0.71 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21003680 118 + 22407834 AUCGCCUUUCGCUUUGCUAUACACUCGACCAAUGGGUCUUAUUGACUGUGUGAACCCAAAGGAUAGAUGUGAAUUUUUGAGAGUAUCAUAUAUUCUUAUCUAAUCUAUGUAAGGACAG ...(((((.(((((((.((((((.((((((....)))).....)).))))))....)))))((((((((.((((...(((.....)))...)))).))))).)))..)).)))).).. ( -25.60) >DroSec_CAF1 52392 118 + 1 AUCGCCUUUCGCUUUAUUAUACACUCGACCAAUGGGGCUUAUUGGCCGGGUGAACCCAAAGGAUAGAUGUGAAUUUUUGAGAGUAUCAUAUAUUCCUAUCUGAUCUUUGAAAGAACAG .....(((((...........((((((.((((((.....)))))).)))))).....(((((.((((((.((((...(((.....)))...)))).)))))).))))))))))..... ( -32.20) >DroSim_CAF1 54276 118 + 1 AUCGCCUUUCGCUUUAUUAUACACUCGACCAAUGGGGCUUAUUGGCUGGGUGAACCCAAAGGAUAGAUGUGAAUUUUUGAGAGUAUCAUAUAUUCCUAUCUGAUCUGUAAAAGAACAG ...(((....((((((((............)))))))).....)))((((....)))).((((...((((((((((....)))).))))))..))))..(((.(((.....))).))) ( -29.30) >DroEre_CAF1 58030 118 + 1 AUCGCCUUUCGCUUUAUUAUACACUCGGCCAUUGGGGCUUGUUGGCUGAGUGAACCUGAAGGAUAGAUGCGAAGUUUCGAGGGCCUCAUAUGUUCUUAUCUUAUCUAUGAAAGAAAAG ...((((((((((((((....((((((((((...........))))))))))..((....))))))).))))).......))))........(((((.((........)))))))... ( -32.31) >DroYak_CAF1 63260 117 + 1 AUCGCCUUUCGCUUUAUUAUACACUCGGCCAAUGGGGCUUAUUGGCUGAGUGAACCUAAAGGAUAGAUUCGAAUAUUUGAGGGCCUCAUAU-UUCUUAUCUUAUCUAUAUAAGAAAGG ....((((((.(((((.....(((((((((((((.....)))))))))))))....)))))(((((((..(((....((((...))))...-)))..))).)))).......)))))) ( -36.80) >consensus AUCGCCUUUCGCUUUAUUAUACACUCGACCAAUGGGGCUUAUUGGCUGAGUGAACCCAAAGGAUAGAUGUGAAUUUUUGAGAGUAUCAUAUAUUCUUAUCUGAUCUAUGAAAGAACAG .....((((((..........((((((.((((((.....)))))).))))))........(((((((((.((((...(((.....)))...)))).))))).)))).))))))..... (-22.18 = -23.90 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:41 2006