Locus 7593

Sequence ID 2L_DroMel_CAF1
Location 21,003,090 – 21,003,210
Length 120
Max. P 0.980050
window12208

overview

Window 8

Location 21,003,090 – 21,003,210
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -20.62
Consensus MFE -20.03
Energy contribution -20.03
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.97
SVM decision value 1.85
SVM RNA-class probability 0.980050
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21003090 120 - 22407834
AGCAGCAGGCGAAGCAAAAAAUAUUGCAUCUUCUCAAGCAUUUAAUCUUCUUUGCGCCUUUUUUAACCUUUUAUUAUUAUGCCUUCAACGUGCAAACGUUUUGCUACGCUUUAUAUACCC
((((((((((((.((((......)))).)).......(((............))))))............................(((((....))))).))))..))).......... ( -20.10)
>DroPse_CAF1 126013 120 - 1
AACAGCAGGCGAAGCAAAAAAUAUUGCAUCUUCUCAAGCAUUUAAUCUUCUUUGCGCCUUUUUUAACCUUUUAUUAUUAUGCCUUCAACGUGCAAACGUUUUGCUACGCUUUAUACUCGC
......(((((.(((((((....((((((........((((.((((..........................))))..)))).......))))))...))))))).)))))......... ( -20.03)
>DroEre_CAF1 57418 120 - 1
AGCAGCAGGCGAAGCAAAAAAUAUUGCAUCUUCUCAAGCAUUUAAUCUUCUUUGCGCCUUUUUUAACCUUUUAUUAUUAUGCCUUCAACGUGCAAACGUUUUGCUACGCUUUAUAUACCC
((((((((((((.((((......)))).)).......(((............))))))............................(((((....))))).))))..))).......... ( -20.10)
>DroYak_CAF1 62653 120 - 1
AGCAGCAGGCGAAGCAAAAAAUAUUGCAUCUUCCCAAGCAUUUAAUCUUCUUUGCGCCUUUUUUAACCUUUUAUUAUUAUGCCUUCAACGUGCAAACGUUUUGCUACGCUUUAUAUACCC
((((((((((((.((((......)))).)).......(((............))))))............................(((((....))))).))))..))).......... ( -20.10)
>DroAna_CAF1 83306 120 - 1
AGCAGCAGGCGAAGCAAAAAAUAUUGCAUCUUCUCAAGCAUUUAAUCUUCUUUGCGCCUUUUUUAACCUUUUAUUAUUAUGCCUUCAACGUGCAAACGUUUUGCUACGCUUUAUAUGCCC
.(((..(((((.(((((((....((((((........((((.((((..........................))))..)))).......))))))...))))))).)))))....))).. ( -23.33)
>DroPer_CAF1 116577 120 - 1
AACAGCAGGCGAAGCAAAAAAUAUUGCAUCUUCUCAAGCAUUUAAUCUUCUUUGCGCCUUUUUUAACCUUUUAUUAUUAUGCCUUCAACGUGCAAACGUUUUGCUACGCUUUAUACUCGC
......(((((.(((((((....((((((........((((.((((..........................))))..)))).......))))))...))))))).)))))......... ( -20.03)
>consensus
AGCAGCAGGCGAAGCAAAAAAUAUUGCAUCUUCUCAAGCAUUUAAUCUUCUUUGCGCCUUUUUUAACCUUUUAUUAUUAUGCCUUCAACGUGCAAACGUUUUGCUACGCUUUAUAUACCC
......(((((.(((((((....((((((........((((.((((..........................))))..)))).......))))))...))))))).)))))......... (-20.03 = -20.03 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:40 2006