Locus 7591

Sequence ID	2L_DroMel_CAF1
Location	20,999,504 – 20,999,597
Length	93
Max. P	0.689427

overview

Window 4

Location	20,999,504 – 20,999,597
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	97.85
Mean single sequence MFE	-22.32
Consensus MFE	-20.65
Energy contribution	-20.65
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.29
Structure conservation index	0.93
SVM decision value	0.33
SVM RNA-class probability	0.689427
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 20999504 93 - 22407834
CAAGCACAACUAUUGCAGCUGUGAAAGGCAAUUUGUAAUUGUGUCGUUGGGAAAGAAGGAAUAAAAUGGGAAACAGAUGCCUGGGUGGCUGUG
..............(((((..(...(((((.(((((..(..(.((.((.......)).)).....)..)...))))))))))..)..))))). ( -21.20)
>DroSec_CAF1 48287 93 - 1
CAAGCACAACUAUUGCAGCUGUGAAAGGCAAUUUGUAAUUGUGUCGUUGGGAAAGAAGGAAUAAAAUGGGAAACAGAUGCCUGGGUGGCUGUG
..............(((((..(...(((((.(((((..(..(.((.((.......)).)).....)..)...))))))))))..)..))))). ( -21.20)
>DroSim_CAF1 48726 93 - 1
CAAGCACAACUAUUGCAGCUGUGAAAGGCAAUUUGUAAUUGUGUCGUUGGGAAAGAAGGAAUAAAAUGGGAUACAGAUGCCUGGGUGGCUGUG
..............(((((..(...(((((.((((((.(..(.((.((.......)).)).....)..)..)))))))))))..)..))))). ( -22.60)
>DroEre_CAF1 54031 93 - 1
CAAGCACAACUAUUGCAGCUGUGAAAGGCAAUUUGUAAUUGUGUCGUUGGGAGAGCAGGAAUAAAAUGGGAAACAGAUGCCUGGGUGGCUGUG
..............(((((..(...(((((.(((((..((((.((.....))..))))..)))))...(....)...)))))..)..))))). ( -24.00)
>DroYak_CAF1 58508 93 - 1
CAAGCACAACUAUUGCAGCUGUGAAAGGCAAUUUGUAAUUUUGUCGUUGGGGAAGAAGGAAUAAAAUGGGAAACAGAUGCCUGGGUGGCUGUG
..............(((((..(...(((((.(((((.((((((((.((.......)).).))))))).....))))))))))..)..))))). ( -22.60)
>consensus
CAAGCACAACUAUUGCAGCUGUGAAAGGCAAUUUGUAAUUGUGUCGUUGGGAAAGAAGGAAUAAAAUGGGAAACAGAUGCCUGGGUGGCUGUG
..............(((((..(...(((((.(((((.....(.(((((................))))).).))))))))))..)..))))). (-20.65 = -20.65 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:36 2006