Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,173,744 – 2,173,840 |
Length | 96 |
Max. P | 0.563223 |
Location | 2,173,744 – 2,173,840 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.96 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -12.41 |
Energy contribution | -12.99 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.00 |
Mean z-score | -2.54 |
Structure conservation index | 0.46 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2173744 96 - 22407834 -----CUGUCUG-AGUAACCUGUUGUGUGAAU-UAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG------------ -----......(-(((..(((((....((((.-((((((-((....)))))))).))))....))))).......((..((((......)))).))...)))).------------ ( -26.80) >DroSim_CAF1 14205 96 - 1 -----CUGUCUG-AGUAACCUGUUGUGUGAAU-UAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG------------ -----......(-(((..(((((....((((.-((((((-((....)))))))).))))....))))).......((..((((......)))).))...)))).------------ ( -26.80) >DroEre_CAF1 17543 96 - 1 -----CUGUCUG-AGUAACCUGUUGUGUGAAU-UAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG------------ -----......(-(((..(((((....((((.-((((((-((....)))))))).))))....))))).......((..((((......)))).))...)))).------------ ( -26.80) >DroYak_CAF1 18282 96 - 1 -----CUGUCUG-AGUAACCUGUUGUGUGAAU-UAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG------------ -----......(-(((..(((((....((((.-((((((-((....)))))))).))))....))))).......((..((((......)))).))...)))).------------ ( -26.80) >DroMoj_CAF1 19146 104 - 1 -----CGAAUUGUUGUAACCUGUUGUGUGAAUUUAUGUU-ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGACUUAUGCCGCCG------ACACAGCAAAUGCAACA -----.....(((((((...(((((((((((..((((((-((....)))))))).)))........(((((((......)))))...))....------))))))))..))))))) ( -31.40) >DroAna_CAF1 15315 83 - 1 CGGCUUUGUCUC-AGUAACCUGUUGU-UGAAA-UAUGUUAACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAG------------------CUCG------------ .(((((......-.....(((((..(-(((((-(((((((.(....))))))))))))))...)))))(((.....))))))------------------))..------------ ( -23.30) >consensus _____CUGUCUG_AGUAACCUGUUGUGUGAAU_UAUGUU_ACGAACGUAACGUGUUUCAAAAUAUAGGAAGUCUUGCUUGAGUUAUAAUACUCCGCUCAACUCG____________ ..................(((((....(((...((((((.((....))))))))..)))....)))))(((.....)))(((((..............)))))............. (-12.41 = -12.99 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:56 2006