Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,993,869 – 20,993,964 |
Length | 95 |
Max. P | 0.938115 |
Location | 20,993,869 – 20,993,964 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 89.12 |
Mean single sequence MFE | -30.97 |
Consensus MFE | -25.67 |
Energy contribution | -26.00 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.05 |
Structure conservation index | 0.83 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20993869 95 + 22407834 CGAAGCCUAAGCUGAAGAAGAGCAGAGCACACCAGUGCUAAAGGCCAGGUGAGUGUCAGUCCGAAAGGCAGGAAGCAACUGCAACACUUGACCAG ....((((..(((.......)))..(((((....)))))..))))..(((((((((.....(....)((((.......)))).)))))).))).. ( -31.00) >DroEre_CAF1 48431 90 + 1 -----CUAAAGCUAAGGAAGAGCAGAGCACACCAGUGCUAAAGGCCAGGUGAGUGUCAUGCCGAAAGGCAGGAAGCAACUGAAACACUUGACCAG -----.....(((.......)))..(((((....)))))...((.(((((((((.((.((((....)))).))....)))....)))))).)).. ( -29.70) >DroYak_CAF1 52980 95 + 1 UGAAGUUGAAGCUUAAGGAGAGCAGAGCACACCAGUGCUAAAGGCCAGGUGAGUGUCAGGCCGAAAGGCAGGAAGCAACUGCAACACUUGACCAG ..........((((.....))))..(((((....)))))...((.((((((....((..(((....)))..)).((....))..)))))).)).. ( -32.20) >consensus _GAAGCUAAAGCUAAAGAAGAGCAGAGCACACCAGUGCUAAAGGCCAGGUGAGUGUCAGGCCGAAAGGCAGGAAGCAACUGCAACACUUGACCAG ..........(((.......)))..(((((....)))))...((.(((((((((.((..(((....)))..))....)))....)))))).)).. (-25.67 = -26.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:34 2006