Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 20,989,939 – 20,990,033 |
Length | 94 |
Max. P | 0.530588 |
Location | 20,989,939 – 20,990,033 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 84.83 |
Mean single sequence MFE | -24.45 |
Consensus MFE | -20.73 |
Energy contribution | -21.23 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.85 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 20989939 94 - 22407834 GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUAUUA-----------CGAUCCCAUCUCGUU .........((.(((((..((((((.........))))))(((((((......)))).)))......))))).))...(-----------(((.......)))). ( -24.50) >DroSec_CAF1 38845 94 - 1 GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUGUUA-----------CGAUCCCAUCUCGUU .........((.(((((..((((((.........))))))(((((((......)))).)))......))))).))...(-----------(((.......)))). ( -24.50) >DroSim_CAF1 39236 94 - 1 GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUGUUA-----------CGAUCCCAUCUCGUU .........((.(((((..((((((.........))))))(((((((......)))).)))......))))).))...(-----------(((.......)))). ( -24.50) >DroEre_CAF1 44538 83 - 1 GUUAUAAAAAGUCAUGUUCCGCUGCACUUAAUUAGCGGCCGACCUCAGCGGCAUGAGUGUCAUGCCCAUAUGUCUAUUA-----------U-----------GUU ..(((((..((.(((((((.(((((.........))))).)).....(.((((((.....)))))))))))).)).)))-----------)-----------).. ( -21.90) >DroYak_CAF1 48951 83 - 1 GUUAUAAAAAGUCAUGUUUGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUAUUA-----------U-----------GUU ..(((((..((.(((((..((((((.........))))))(((((((......)))).)))......))))).)).)))-----------)-----------).. ( -23.20) >DroAna_CAF1 70414 102 - 1 GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCUACUGAAUGAGUGUCAUGCCCAUAUGUCCUCUUCUAUUUAGGAGAGAUGCCAUC---UU ..........(.(((((..((((((.........))))))((((((........))).)))......))))).)(((((((....)))))))........---.. ( -28.10) >consensus GUUAUAAAAAGUCAUGUUCGGCUGCACUUAAUUAGCGGCCGACCUCAGCGGAAUGAGUGUCAUGCCCAUAUGUCUAUUA___________CGAUCCCAUC__GUU .........((.(((((..((((((.........))))))(((((((......)))).)))......))))).)).............................. (-20.73 = -21.23 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:33 2006